Literature DB >> 11483502

Roles for 147 embryonic lethal genes on C.elegans chromosome I identified by RNA interference and video microscopy.

P Zipperlen1, A G Fraser, R S Kamath, M Martinez-Campos, J Ahringer.   

Abstract

Early embryonic development involves complex events such as the regulation of cell division and the establishment of embryonic polarity. To identify genes involved in these events, we collected four-dimensional time-lapse video recordings of the first three cell divisions and analysed terminal phenotypes after RNA interference of 147 embryonic lethal genes previously identified in a systematic screen of Caenorhabditis elegans chromosome I. Over half gave defects in early processes such as meiosis, the assembly or position of the first mitotic spindle, cytokinesis, and proper nuclear positioning. For some phenotypic classes, the majority of genes are involved in a shared biochemical process. In addition, we identified loss-of-function phenotypes for genes of unknown function, but for which homologues exist in other organisms, shedding light on the function of these uncharacterized genes. When applied to the whole genome, this approach should identify the vast majority of genes required for early cell processes, paving the way for a greatly improved understanding of these processes and their regulation at the molecular level.

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Year:  2001        PMID: 11483502      PMCID: PMC149177          DOI: 10.1093/emboj/20.15.3984

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  40 in total

1.  A global profile of germline gene expression in C. elegans.

Authors:  V Reinke; H E Smith; J Nance; J Wang; C Van Doren; R Begley; S J Jones; E B Davis; S Scherer; S Ward; S K Kim
Journal:  Mol Cell       Date:  2000-09       Impact factor: 17.970

2.  Functional genomic analysis of C. elegans chromosome I by systematic RNA interference.

Authors:  A G Fraser; R S Kamath; P Zipperlen; M Martinez-Campos; M Sohrmann; J Ahringer
Journal:  Nature       Date:  2000-11-16       Impact factor: 49.962

3.  EMB-30: an APC4 homologue required for metaphase-to-anaphase transitions during meiosis and mitosis in Caenorhabditis elegans.

Authors:  T Furuta; S Tuck; J Kirchner; B Koch; R Auty; R Kitagawa; A M Rose; D Greenstein
Journal:  Mol Biol Cell       Date:  2000-04       Impact factor: 4.138

4.  MEI-1/MEI-2 katanin-like microtubule severing activity is required for Caenorhabditis elegans meiosis.

Authors:  M Srayko; D W Buster; O A Bazirgan; F J McNally; P E Mains
Journal:  Genes Dev       Date:  2000-05-01       Impact factor: 11.361

5.  A novel class of eukaryotic zinc-binding proteins is required for disease resistance signaling in barley and development in C. elegans.

Authors:  K Shirasu; T Lahaye; M W Tan; F Zhou; C Azevedo; P Schulze-Lefert
Journal:  Cell       Date:  1999-11-12       Impact factor: 41.582

6.  Incenp and an aurora-like kinase form a complex essential for chromosome segregation and efficient completion of cytokinesis.

Authors:  S Kaitna; M Mendoza; V Jantsch-Plunger; M Glotzer
Journal:  Curr Biol       Date:  2000-10-05       Impact factor: 10.834

7.  MEX-3 is a KH domain protein that regulates blastomere identity in early C. elegans embryos.

Authors:  B W Draper; C C Mello; B Bowerman; J Hardin; J R Priess
Journal:  Cell       Date:  1996-10-18       Impact factor: 41.582

8.  A CBP/p300 homolog specifies multiple differentiation pathways in Caenorhabditis elegans.

Authors:  Y Shi; C Mello
Journal:  Genes Dev       Date:  1998-04-01       Impact factor: 11.361

9.  UNC-73 activates the Rac GTPase and is required for cell and growth cone migrations in C. elegans.

Authors:  R Steven; T J Kubiseski; H Zheng; S Kulkarni; J Mancillas; A Ruiz Morales; C W Hogue; T Pawson; J Culotti
Journal:  Cell       Date:  1998-03-20       Impact factor: 41.582

10.  A putative catenin-cadherin system mediates morphogenesis of the Caenorhabditis elegans embryo.

Authors:  M Costa; W Raich; C Agbunag; B Leung; J Hardin; J R Priess
Journal:  J Cell Biol       Date:  1998-04-06       Impact factor: 10.539

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  51 in total

1.  Multiple subunits of the Caenorhabditis elegans anaphase-promoting complex are required for chromosome segregation during meiosis I.

Authors:  Edward S Davis; Lucia Wille; Barry A Chestnut; Penny L Sadler; Diane C Shakes; Andy Golden
Journal:  Genetics       Date:  2002-02       Impact factor: 4.562

2.  Ran GTPase cycle and importins alpha and beta are essential for spindle formation and nuclear envelope assembly in living Caenorhabditis elegans embryos.

Authors:  Peter Askjaer; Vincent Galy; Eva Hannak; Iain W Mattaj
Journal:  Mol Biol Cell       Date:  2002-12       Impact factor: 4.138

3.  RNAiDB and PhenoBlast: web tools for genome-wide phenotypic mapping projects.

Authors:  Kristin C Gunsalus; Wan-Chen Yueh; Philip MacMenamin; Fabio Piano
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

Review 4.  Resistance and susceptibility of plants to fungal pathogens.

Authors:  Kazuhiro Toyoda; Nicholas C Collins; Akira Takahashi; Ken Shirasu
Journal:  Transgenic Res       Date:  2002-12       Impact factor: 2.788

Review 5.  Anaphase-promoting complex in Caenorhabditis elegans.

Authors:  Foong May Yeong
Journal:  Mol Cell Biol       Date:  2004-03       Impact factor: 4.272

6.  Cortical domain correction repositions the polarity boundary to match the cytokinesis furrow in C. elegans embryos.

Authors:  Christian Schenk; Henrik Bringmann; Anthony A Hyman; Carrie R Cowan
Journal:  Development       Date:  2010-05       Impact factor: 6.868

7.  The Caenorhabditis elegans ekl (enhancer of ksr-1 lethality) genes include putative components of a germline small RNA pathway.

Authors:  Christian E Rocheleau; Kevin Cullison; Kai Huang; Yelena Bernstein; Annina C Spilker; Meera V Sundaram
Journal:  Genetics       Date:  2008-02-03       Impact factor: 4.562

Review 8.  From genes to function: the C. elegans genetic toolbox.

Authors:  Thomas Boulin; Oliver Hobert
Journal:  Wiley Interdiscip Rev Dev Biol       Date:  2011-11-28       Impact factor: 5.814

9.  Toward improving Caenorhabditis elegans phenome mapping with an ORFeome-based RNAi library.

Authors:  Jean-François Rual; Julian Ceron; John Koreth; Tong Hao; Anne-Sophie Nicot; Tomoko Hirozane-Kishikawa; Jean Vandenhaute; Stuart H Orkin; David E Hill; Sander van den Heuvel; Marc Vidal
Journal:  Genome Res       Date:  2004-10       Impact factor: 9.043

10.  A role for Caenorhabditis elegans importin IMA-2 in germ line and embryonic mitosis.

Authors:  Kenneth G Geles; Jeffrey J Johnson; Sena Jong; Stephen A Adam
Journal:  Mol Biol Cell       Date:  2002-09       Impact factor: 4.138

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