Literature DB >> 11471239

Evaluation of computer tools for the prediction of transcription factor binding sites on genomic DNA.

E Roulet1, I Fisch, T Junier, P Bucher, N Mermod.   

Abstract

Mesh：

Substances：

Year:  1998        PMID： 11471239

Source DB:  PubMed          Journal:  In Silico Biol        ISSN： 1386-6338


× No keyword cloud information.
  13 in total

1.  ACTIVITY: a database on DNA/RNA sites activity adapted to apply sequence-activity relationships from one system to another.

Authors:  J V Ponomarenko; D P Furman; A S Frolov; N L Podkolodny; G V Orlova; M P Ponomarenko; N A Kolchanov; A Sarai
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

2.  Statistical significance of clusters of motifs represented by position specific scoring matrices in nucleotide sequences.

Authors:  Martin C Frith; John L Spouge; Ulla Hansen; Zhiping Weng
Journal:  Nucleic Acids Res       Date:  2002-07-15       Impact factor: 16.971

3.  Identification of patterns in biological sequences at the ALGGEN server: PROMO and MALGEN.

Authors:  Domènec Farré; Romà Roset; Mario Huerta; José E Adsuara; Llorenç Roselló; M Mar Albà; Xavier Messeguer
Journal:  Nucleic Acids Res       Date:  2003-07-01       Impact factor: 16.971

Review 4.  Experimental strategies for studying transcription factor-DNA binding specificities.

Authors:  Marcel Geertz; Sebastian J Maerkl
Journal:  Brief Funct Genomics       Date:  2010-09-23       Impact factor: 4.241

5.  Distribution of centromere-like parS sites in bacteria: insights from comparative genomics.

Authors:  Jonathan Livny; Yoshiharu Yamaichi; Matthew K Waldor
Journal:  J Bacteriol       Date:  2007-09-28       Impact factor: 3.490

6.  Search for new binding sites for the transcriptional factor SF-1 by the SITECON method: experimental verification and analysis of regulatory regions of orthologous genes.

Authors:  E V Ignat'eva; N V Klimova; D Y Oshchepkov; G V Vasil'ev; T I Merkulova; N A Kolchanov
Journal:  Dokl Biochem Biophys       Date:  2007 Jul-Aug       Impact factor: 0.788

7.  Definition and prediction of the full range of transcription factor binding sites--the hepatocyte nuclear factor 1 dimeric site.

Authors:  Joseph Locker; David Ghosh; Phuong-Van Luc; Jianhua Zheng
Journal:  Nucleic Acids Res       Date:  2002-09-01       Impact factor: 16.971

8.  W-ChIPMotifs: a web application tool for de novo motif discovery from ChIP-based high-throughput data.

Authors:  Victor X Jin; Jeff Apostolos; Naga Satya Venkateswara Ra Nagisetty; Peggy J Farnham
Journal:  Bioinformatics       Date:  2009-10-01       Impact factor: 6.937

9.  A novel method for improved accuracy of transcription factor binding site prediction.

Authors:  Abdullah M Khamis; Olaa Motwalli; Romina Oliva; Boris R Jankovic; Yulia A Medvedeva; Haitham Ashoor; Magbubah Essack; Xin Gao; Vladimir B Bajic
Journal:  Nucleic Acids Res       Date:  2018-07-06       Impact factor: 16.971

10.  Nuclear Factor I genomic binding associates with chromatin boundaries.

Authors:  Milos Pjanic; Christoph D Schmid; Armelle Gaussin; Giovanna Ambrosini; Jozef Adamcik; Petar Pjanic; Genta Plasari; Jan Kerschgens; Giovani Dietler; Philipp Bucher; Nicolas Mermod
Journal:  BMC Genomics       Date:  2013-02-12       Impact factor: 3.969
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.