Literature DB >> 11463619

Heat capacity of protein folding.

A Bakk1, J S Høye, A Hansen.   

Abstract

We construct a Hamiltonian for a single domain protein where the contact enthalpy and the chain entropy decrease linearly with the number of native contacts. The hydration effect upon protein unfolding is included by modeling water as ideal dipoles that are ordered around the unfolded surfaces, where the influence of these surfaces, covered with an "ice-like" shell of water, is represented by an effective field that directs the water dipoles. An intermolecular pair interaction between water molecules is also introduced. The heat capacity of the model exhibits, the common feature of small globular proteins, two peaks corresponding to cold and warm unfolding, respectively. By introducing ad hoc vibrational modes, we obtain quantitatively good accordance with experiments on myoglobin.

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Year:  2001        PMID: 11463619      PMCID: PMC1301547          DOI: 10.1016/S0006-3495(01)75735-9

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  20 in total

1.  A theoretical search for folding/unfolding nuclei in three-dimensional protein structures.

Authors:  O V Galzitskaya; A V Finkelstein
Journal:  Proc Natl Acad Sci U S A       Date:  1999-09-28       Impact factor: 11.205

2.  Thermodynamical implications of a protein model with water interactions.

Authors:  A Bakk; J S Høye; A Hansen; K Sneppen
Journal:  J Theor Biol       Date:  2001-06-07       Impact factor: 2.691

3.  Computer simulation of protein folding.

Authors:  M Levitt; A Warshel
Journal:  Nature       Date:  1975-02-27       Impact factor: 49.962

4.  Calculations of electrostatic energies in proteins. The energetics of ionized groups in bovine pancreatic trypsin inhibitor.

Authors:  S T Russell; A Warshel
Journal:  J Mol Biol       Date:  1985-09-20       Impact factor: 5.469

5.  Theoretical studies of enzymic reactions: dielectric, electrostatic and steric stabilization of the carbonium ion in the reaction of lysozyme.

Authors:  A Warshel; M Levitt
Journal:  J Mol Biol       Date:  1976-05-15       Impact factor: 5.469

Review 6.  Stability of protein structure and hydrophobic interaction.

Authors:  P L Privalov; S J Gill
Journal:  Adv Protein Chem       Date:  1988

7.  Cold denaturation of myoglobin.

Authors:  P L Privalov; V P Kutyshenko
Journal:  J Mol Biol       Date:  1986-08-05       Impact factor: 5.469

8.  Principles that govern the folding of protein chains.

Authors:  C B Anfinsen
Journal:  Science       Date:  1973-07-20       Impact factor: 47.728

9.  Amino acid conformational preferences and solvation of polar backbone atoms in peptides and proteins.

Authors:  F Avbelj
Journal:  J Mol Biol       Date:  2000-07-28       Impact factor: 5.469

10.  Spin glasses and the statistical mechanics of protein folding.

Authors:  J D Bryngelson; P G Wolynes
Journal:  Proc Natl Acad Sci U S A       Date:  1987-11       Impact factor: 11.205

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  3 in total

1.  Apolar and polar solvation thermodynamics related to the protein unfolding process.

Authors:  Audun Bakk; Johan S Høye; Alex Hansen
Journal:  Biophys J       Date:  2002-02       Impact factor: 4.033

Review 2.  Heat capacity changes associated with nucleic acid folding.

Authors:  Peter J Mikulecky; Andrew L Feig
Journal:  Biopolymers       Date:  2006-05       Impact factor: 2.505

3.  Effects of disulfide bonds on folding behavior and mechanism of the beta-sheet protein tendamistat.

Authors:  Meng Qin; Jian Zhang; Wei Wang
Journal:  Biophys J       Date:  2005-10-07       Impact factor: 4.033

  3 in total

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