Literature DB >> 11457382

Incorporating beta-turns and a turn mimetic out of context in loop 1 of the WW domain affords cooperatively folded beta-sheets.

R Kaul1, A R Angeles, M Jäger, E T Powers, J W Kelly.   

Abstract

To probe the conformational requirements of loop 1 in the Pin1 WW domain, the residues at the i + 2 and i + 3 positions of a beta-turn within this loop were replaced by dPro-Gly and Asn-Gly, which are known to prefer the conformations required at the i + 1 and i + 2 positions of type II' and type I' beta-turns. Conformational specificity or lack thereof was further examined by incorporating into the i + 2 and i + 3 positions a non-alpha-amino acid-based beta-turn mimetic (4-(2'-aminoethyl)-6-dibenzofuran propionic acid residue, 1), which was designed to replace the i + 1 and i + 2 positions of beta-turns. All these Pin WW variants are monomeric and folded as discerned by analytical ultracentrifugation, NMR, and CD. They exhibit cooperative two-state transitions and display thermodynamic stability within 0.5 kcal/mol of the wild-type WW domain, demonstrating that the acquisition of native structure and stability does not require a specific sequence and, by extension, conformation within loop 1. However, it could be that these loop 1 mutations alter the kinetics of antiparallel beta-sheet folding, which will be addressed by subsequent kinetic studies.

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Year:  2001        PMID: 11457382     DOI: 10.1021/ja0102890

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  22 in total

1.  Using flexible loop mimetics to extend phi-value analysis to secondary structure interactions.

Authors:  N Ferguson; J R Pires; F Toepert; C M Johnson; Y P Pan; R Volkmer-Engert; J Schneider-Mergener; V Daggett; H Oschkinat; A Fersht
Journal:  Proc Natl Acad Sci U S A       Date:  2001-10-30       Impact factor: 11.205

2.  Evaluating beta-turn mimics as beta-sheet folding nucleators.

Authors:  Amelia A Fuller; Deguo Du; Feng Liu; Jennifer E Davoren; Gira Bhabha; Gerard Kroon; David A Case; H Jane Dyson; Evan T Powers; Peter Wipf; Martin Gruebele; Jeffery W Kelly
Journal:  Proc Natl Acad Sci U S A       Date:  2009-06-18       Impact factor: 11.205

3.  Sequence determinants of thermodynamic stability in a WW domain--an all-beta-sheet protein.

Authors:  Marcus Jäger; Maria Dendle; Jeffery W Kelly
Journal:  Protein Sci       Date:  2009-08       Impact factor: 6.725

4.  Evaluation of β-Amino Acid Replacements in Protein Loops: Effects on Conformational Stability and Structure.

Authors:  David E Mortenson; Dale F Kreitler; Nicole C Thomas; Ilia A Guzei; Samuel H Gellman; Katrina T Forest
Journal:  Chembiochem       Date:  2018-02-13       Impact factor: 3.164

Review 5.  Proteomimetics as protein-inspired scaffolds with defined tertiary folding patterns.

Authors:  W Seth Horne; Tom N Grossmann
Journal:  Nat Chem       Date:  2020-02-06       Impact factor: 24.427

6.  Glycosylation of the enhanced aromatic sequon is similarly stabilizing in three distinct reverse turn contexts.

Authors:  Joshua L Price; David L Powers; Evan T Powers; Jeffery W Kelly
Journal:  Proc Natl Acad Sci U S A       Date:  2011-08-08       Impact factor: 11.205

7.  Design and NMR conformational study of a beta-sheet peptide based on Betanova and WW domains.

Authors:  Ana M Fernández-Escamilla; Salvador Ventura; Luis Serrano; M Angeles Jiménez
Journal:  Protein Sci       Date:  2006-09-08       Impact factor: 6.725

8.  Foldamer Tertiary Structure through Sequence-Guided Protein Backbone Alteration.

Authors:  Kelly L George; W Seth Horne
Journal:  Acc Chem Res       Date:  2018-04-19       Impact factor: 22.384

9.  Modulation of zinc- and cobalt-binding affinities through changes in the stability of the zinc ribbon protein L36.

Authors:  Wenpeng Kou; Harsha S Kolla; Alfonso Ortiz-Acevedo; Donovan C Haines; Matthew Junker; Gregg R Dieckmann
Journal:  J Biol Inorg Chem       Date:  2005-03-04       Impact factor: 3.358

10.  Temperature-dependent folding pathways of Pin1 WW domain: an all-atom molecular dynamics simulation of a Gō model.

Authors:  Zhonglin Luo; Jiandong Ding; Yaoqi Zhou
Journal:  Biophys J       Date:  2007-05-18       Impact factor: 4.033

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