Literature DB >> 11457011

Proton migration and tautomerism in protonated triglycine.

C F Rodriquez1, A Cunje, T Shoeib, I K Chu, A C Hopkinson, K W Siu.   

Abstract

Proton migration in protonated glycylglycylglycine (GGG) has been investigated by using density functional theory at the B3LYP/6-31++G(d,p) level of theory. On the protonated GGG energy hypersurface 19 critical points have been characterized, 11 as minima and 8 as first-order saddle points. Transition state structures for interconversion between eight of these minima are reported, starting from a structure in which there is protonation at the amino nitrogen of the N-terminal glycyl residue following the migration of the proton until there is fragmentation into protonated 2-aminomethyl-5-oxazolone (the b(2) ion) and glycine. Individual free energy barriers are small, ranging from 4.3 to 18.1 kcal mol(-)(1). The most favorable site of protonation on GGG is the carbonyl oxygen of the N-terminal residue. This isomer is stabilized by a hydrogen bond of the type O-H.N with the N-terminal nitrogen atom, resulting in a compact five-membered ring. Another oxygen-protonated isomer with hydrogen bonding of the type O-H.O, resulting in a seven-membered ring, is only 0.1 kcal mol(-)(1) higher in free energy. Protonation on the N-terminal nitrogen atom produces an isomer that is about 1 kcal mol(-)(1) higher in free energy than isomers resulting from protonation on the carbonyl oxygen of the N-terminal residue. The calculated energy barrier to generate the b(2) ion from protonated GGG is 32.5 kcal mol(-)(1) via TS(6-->7). The calculated basicity and proton affinity of GGG from our results are 216.3 and 223.8 kcal mol(-)(1), respectively. These values are 3-4 kcal mol(-)(1) lower than those from previous calculations and are in excellent agreement with recently revised experimental values.

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Year:  2001        PMID: 11457011     DOI: 10.1021/ja0015904

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  24 in total

1.  Towards understanding the tandem mass spectra of protonated oligopeptides. 2: The proline effect in collision-induced dissociation of protonated Ala-Ala-Xxx-Pro-Ala (Xxx = Ala, Ser, Leu, Val, Phe, and Trp).

Authors:  Christian Bleiholder; Sándor Suhai; Alex G Harrison; Béla Paizs
Journal:  J Am Soc Mass Spectrom       Date:  2011-04-12       Impact factor: 3.109

2.  Diagnosing the protonation site of b2 peptide fragment ions using IRMPD in the X-H (X = O, N, and C) stretching region.

Authors:  Rajeev K Sinha; Undine Erlekam; Benjamin J Bythell; Béla Paizs; Philippe Maître
Journal:  J Am Soc Mass Spectrom       Date:  2011-06-21       Impact factor: 3.109

3.  Backbone cleavages and sequential loss of carbon monoxide and ammonia from protonated AGG: a combined tandem mass spectrometry, isotope labeling, and theoretical study.

Authors:  Benjamin J Bythell; Douglas F Barofsky; Francesco Pingitore; Michael J Polce; Ping Wang; Chrys Wesdemiotis; Béla Paizs
Journal:  J Am Soc Mass Spectrom       Date:  2007-04-10       Impact factor: 3.109

4.  Time-resolved photodissociation of singly protonated peptides with an arginine at the N-terminus: a statistical interpretation.

Authors:  So Hee Yoon; Yeon Ji Chung; Myung Soo Kim
Journal:  J Am Soc Mass Spectrom       Date:  2008-02-23       Impact factor: 3.109

5.  Kinetics for tautomerizations and dissociations of triglycine radical cations.

Authors:  Chi-Kit Siu; Junfang Zhao; Julia Laskin; Ivan K Chu; Alan C Hopkinson; K W Michael Siu
Journal:  J Am Soc Mass Spectrom       Date:  2009-01-29       Impact factor: 3.109

6.  Spectroscopic evidence for an oxazolone structure of the b(2) fragment ion from protonated tri-alanine.

Authors:  Jos Oomens; Sarah Young; Sam Molesworth; Michael van Stipdonk
Journal:  J Am Soc Mass Spectrom       Date:  2008-11-01       Impact factor: 3.109

7.  Thermodynamics and Reaction Mechanisms of Decomposition of the Simplest Protonated Tripeptide, Triglycine: A Guided Ion Beam and Computational Study.

Authors:  Abhigya Mookherjee; Michael J Van Stipdonk; P B Armentrout
Journal:  J Am Soc Mass Spectrom       Date:  2017-02-14       Impact factor: 3.109

8.  Spectroscopic evidence for mobilization of amide position protons during CID of model peptide ions.

Authors:  Samuel Molesworth; Christopher M Leavitt; Gary S Groenewold; Jos Oomens; Jeffrey D Steill; Michael van Stipdonk
Journal:  J Am Soc Mass Spectrom       Date:  2009-07-01       Impact factor: 3.109

9.  Intramolecular electrophilic aromatic substitution in gas-phase fragmentation of protonated N-benzylbenzaldimines.

Authors:  Shanshan Shen; Yunfeng Chai; Guofeng Weng; Yuanjiang Pan
Journal:  J Am Soc Mass Spectrom       Date:  2014-06-24       Impact factor: 3.109

10.  Sulfur Transfer Versus Phenyl Ring Transfer in the Gas Phase: Sequential Loss of CH3OH and CH3O-P=O from Protonated Phosphorothioates.

Authors:  Xiaoping Zhang; Honghan Chen; Yin Ji; Kezhi Jiang; Huanwen Chen
Journal:  J Am Soc Mass Spectrom       Date:  2018-12-19       Impact factor: 3.109

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