Literature DB >> 11456548

Why is there an "inert" metal center in the active site of nitrile hydratase? Reactivity and ligand dissociation from a five-coordinate Co(III) nitrile hydratase model.

J Shearer1, I Y Kung, S Lovell, W Kaminsky, J A Kovacs.   

Abstract

To determine how a substitutionally inert metal can play a catalytic role in the metalloenzyme nitrile hydratase (NHase), a reactive five-coordinate Co(III) thiolate complex ([Co(III)(S(2)(Me2)N(3)(Pr,Pr))](PF(6)) (1)) that resembles the active site of cobalt containing nitrile hydratase (Co NHase) was prepared. This was screened for reactivity, by using low-temperature electronic absorption spectroscopy, toward a number of biologically relevant "substrates". It was determined 1 will react with azide, thiocyanate, and ammonia, but is unreactive toward nitriles, NO, and butyrate. Substrate-bound 1 has similar spectroscopic and structural properties as [Co(III)(ADIT(2))](PF(6)) (2). Complex 2 is a six-coordinate Co(III) complex containing cis-thiolates and imine nitrogens, and has properties similar to the cobalt center of Co NHase. Substrate binding to 1 is reversible and temperature-dependent, allowing for the determination of the thermodynamic parameters of azide and thiocyanate binding and the rates of ligand dissociation. Azide and thiocyanate bind trans to a thiolate, and with similar entropies and enthalpies (thiocyanate: DeltaH = -7.5 +/- 1.1 kcal/mol, DeltaS = -17.2 +/- 3.2 eu; azide: DeltaH = -6.5 +/- 1.0 kcal/mol, DeltaS = -12.6 +/- 2.4 eu). The rates of azide and thiocyanate displacement from the metal center are also comparable to one another (k(d) = (7.22 +/- 0.04) x 10(-)(1) s(-)(1) for thiocyanate and k(d) = (2.14 +/- 0.50) x 10(-)(2) s(-)(1) for azide), and are considerably faster than one would expect for a low-spin d(6) six-coordinate Co(III) complex. These rates are comparable to those of an analogous Fe(III) complex, demonstrating that Co(III) and Fe(III) react at comparable rates when in this ligand environment. This study therefore indicates that ligand displacement from a low-spin Co(III) center in a ligand environment that resembles NHase is not prohibitively slow so as to disallow catalytic action in nonredox active cobalt metalloenzymes.

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Year:  2001        PMID: 11456548      PMCID: PMC4484831          DOI: 10.1021/ja002642s

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  19 in total

1.  A Co(III) complex in a mixed sulfur/nitrogen ligand environment: modeling the substrate- and product-bound forms of the metalloenzyme thiocyanate hydrolase.

Authors:  J Shearer; I Y Kung; S Lovell; J A Kovacs
Journal:  Inorg Chem       Date:  2000-10-30       Impact factor: 5.165

2.  Co(III) complexes with coordinated carboxamido nitrogens and thiolato sulfurs as models for Co-containing nitrile hydratase and their conversion to the corresponding sulfinato species.

Authors:  L A Tyler; J C Noveron; M M Olmstead; P K Mascharak
Journal:  Inorg Chem       Date:  2000-01-24       Impact factor: 5.165

3.  Cobalt-substituted Fe-type nitrile hydratase of Rhodococcus sp. N-771.

Authors:  M Nojiri; H Nakayama; M Odaka; M Yohda; K Takio; I Endo
Journal:  FEBS Lett       Date:  2000-01-14       Impact factor: 4.124

4.  Crystallization of a photosensitive nitrile hydratase from Rhodococcus sp. N-771.

Authors:  T Nagamune; J Honda; W D Cho; N Kamiya; Y Teratani; A Hirata; H Sasabe; I Endo
Journal:  J Mol Biol       Date:  1991-07-20       Impact factor: 5.469

5.  Processing of X-ray diffraction data collected in oscillation mode.

Authors:  Z Otwinowski; W Minor
Journal:  Methods Enzymol       Date:  1997       Impact factor: 1.600

6.  Purification of inactivated photoresponsive nitrile hydratase.

Authors:  T Nagamune; H Kurata; M Hirata; J Honda; H Koike; M Ikeuchi; Y Inoue; A Hirata; I Endo
Journal:  Biochem Biophys Res Commun       Date:  1990-04-30       Impact factor: 3.575

7.  Nitrile hydratase of Brevibacterium R312--purification and characterization.

Authors:  T Nagasawa; K Ryuno; H Yamada
Journal:  Biochem Biophys Res Commun       Date:  1986-09-30       Impact factor: 3.575

8.  Evaluation of the thermodynamic data reported for the reversible oxygenation of the amine complexes of cobalt (II) protoporphyrin IX dimethyl ester.

Authors:  R M Guidry; R S Drago
Journal:  J Am Chem Soc       Date:  1973-10-03       Impact factor: 15.419

9.  A Pentacoordinated Di-N-carboxamido-dithiolato-O-sulfinato-iron(III) Complex Related to the Metal Site of Nitrile Hydratase.

Authors: 
Journal:  Angew Chem Int Ed Engl       Date:  1999-12-03       Impact factor: 15.336

10.  Location of the non-heme iron center on the alpha subunit of photoreactive nitrile hydratase from Rhodococcus sp. N-771.

Authors:  M Odaka; T Noguchi; S Nagashima; M Yohda; S Yabuki; M Hishino; Y Inoue; I Endo
Journal:  Biochem Biophys Res Commun       Date:  1996-04-05       Impact factor: 3.575

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  21 in total

Review 1.  Synthetic analogues of cysteinate-ligated non-heme iron and non-corrinoid cobalt enzymes.

Authors:  Julie A Kovacs
Journal:  Chem Rev       Date:  2004-02       Impact factor: 60.622

2.  Discovery of posttranslational maturation by self-subunit swapping.

Authors:  Zhemin Zhou; Yoshiteru Hashimoto; Kentaro Shiraki; Michihiko Kobayashi
Journal:  Proc Natl Acad Sci U S A       Date:  2008-09-22       Impact factor: 11.205

3.  Comparison of Structurally-Related Alkoxide, Amine, and Thiolate-Ligated M (M= Fe, Co) Complexes: the Influence of Thiolates on the Properties of Biologically Relevant Metal Complexes.

Authors:  Lisa M Brines; Gloria Villar-Acevedo; Terutaka Kitagawa; Rodney D Swartz; Priscilla Lugo-Mas; Werner Kaminsky; Jason B Benedict; Julie A Kovacs
Journal:  Inorganica Chim Acta       Date:  2008-03-03       Impact factor: 2.545

4.  Nitrile hydration by thiolate- and alkoxide-ligated Co-NHase analogues. Isolation of Co(III)-amidate and Co(III)-iminol intermediates.

Authors:  Rodney D Swartz; Michael K Coggins; Werner Kaminsky; Julie A Kovacs
Journal:  J Am Chem Soc       Date:  2011-02-25       Impact factor: 15.419

5.  The first example of a nitrile hydratase model complex that reversibly binds nitriles.

Authors:  Jason Shearer; Henry L Jackson; Dirk Schweitzer; Durrell K Rittenberg; Tanya M Leavy; Werner Kaminsky; Robert C Scarrow; Julie A Kovacs
Journal:  J Am Chem Soc       Date:  2002-09-25       Impact factor: 15.419

6.  Sequential oxidations of thiolates and the cobalt metallocenter in a synthetic metallopeptide: implications for the biosynthesis of nitrile hydratase.

Authors:  Arnab Dutta; Marco Flores; Souvik Roy; Jennifer C Schmitt; G Alexander Hamilton; Hilairy E Hartnett; Jason M Shearer; Anne K Jones
Journal:  Inorg Chem       Date:  2013-04-15       Impact factor: 5.165

7.  Properties of square-pyramidal alkyl-thiolate Fe(III) complexes, including an analogue of the unmodified form of nitrile hydratase.

Authors:  Priscilla Lugo-Mas; Wendy Taylor; Dirk Schweitzer; Roslyn M Theisen; Liang Xu; Jason Shearer; Rodney D Swartz; Morgan C Gleaves; Antonio Dipasquale; Werner Kaminsky; Julie A Kovacs
Journal:  Inorg Chem       Date:  2008-12-01       Impact factor: 5.165

8.  Increasing reactivity by incorporating π-acceptor ligands into coordinatively unsaturated thiolate-ligated iron(II) complexes.

Authors:  Santiago Toledo; Penny Chaau Yan Poon; Morgan Gleaves; Julian Rees; Dylan M Rogers; Werner Kaminsky; Julie A Kovacs
Journal:  Inorganica Chim Acta       Date:  2021-04-30       Impact factor: 2.545

9.  The effects of hydrogen bonds on metal-mediated O2 activation and related processes.

Authors:  Ryan L Shook; A S Borovik
Journal:  Chem Commun (Camb)       Date:  2008-10-01       Impact factor: 6.222

10.  Molecular dynamics simulations of the photoactive protein nitrile hydratase.

Authors:  Karina Kubiak; Wieslaw Nowak
Journal:  Biophys J       Date:  2008-01-30       Impact factor: 4.033

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