Literature DB >> 21351789

Nitrile hydration by thiolate- and alkoxide-ligated Co-NHase analogues. Isolation of Co(III)-amidate and Co(III)-iminol intermediates.

Rodney D Swartz1, Michael K Coggins, Werner Kaminsky, Julie A Kovacs.   

Abstract

<span class="Chemical">Nitrilen> hydratases (NHases) are <span class="Chemical">thiolate-ligated <span class="Chemical">Fe(III)- or Co(III)-containing enzymes, which convert nitriles to the corresponding amide under mild conditions. Proposed NHase mechanisms involve M(III)-NCR, M(III)-OH, M(III)-iminol, and M(III)-amide intermediates. There have been no reported crystallographically characterized examples of these key intermediates. Spectroscopic and kinetic data support the involvement of a M(III)-NCR intermediate. A H-bonding network facilitates this enzymatic reaction. Herein we describe two biomimetic Co(III)-NHase analogues that hydrate MeCN, and four crystallographically characterized NHase intermediate analogues, [Co(III)(S(Me2)N(4)(tren))(MeCN)](2+) (1), [Co(III)(S(Me2)N(4)(tren))(OH)](+) (3), [Co(III)(S(Me2)N(4)(tren))(NHC(O)CH(3))](+) (2), and [Co(III)(O(Me2)N(4)(tren))(NHC(OH)CH(3))](2+) (5). Iminol-bound 5 represents the first example of a Co(III)-iminol compound in any ligand environment. Kinetic parameters (k(1)(298 K) = 2.98(5) M(-1) s(-1), ΔH(‡) = 12.65(3) kcal/mol, ΔS(‡) = -14(7) e.u.) for nitrile hydration by 1 are reported, and the activation energy E(a) = 13.2 kcal/mol is compared with that (E(a) = 5.5 kcal/mol) of the NHase enzyme. A mechanism involving initial exchange of the bound MeCN for OH- is ruled out by the fact that nitrile exchange from 1 (k(ex)(300 K) = 7.3(1) × 10(-3) s(-1)) is 2 orders of magnitude slower than nitrile hydration, and that hydroxide bound 3 does not promote nitrile hydration. Reactivity of an analogue that incorporates an alkoxide as a mimic of the highly conserved NHase serine residue shows that this moiety facilitates nitrile hydration under milder conditions. Hydrogen-bonding to the alkoxide stabilizes a Co(III)-iminol intermediate. Comparison of the thiolate versus alkoxide intermediate structures shows that C≡N bond activation and C═O bond formation proceed further along the reaction coordinate when a thiolate is incorporated into the coordination sphere.

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Year:  2011        PMID: 21351789      PMCID: PMC3151161          DOI: 10.1021/ja108749f

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  19 in total

Review 1.  Enzymatic synthesis of acrylamide: a success story not yet over.

Authors:  M Kobayashi; T Nagasawa; H Yamada
Journal:  Trends Biotechnol       Date:  1992-11       Impact factor: 19.536

Review 2.  Metalloenzyme nitrile hydratase: structure, regulation, and application to biotechnology.

Authors:  M Kobayashi; S Shimizu
Journal:  Nat Biotechnol       Date:  1998-08       Impact factor: 54.908

3.  Novel non-heme iron center of nitrile hydratase with a claw setting of oxygen atoms.

Authors:  S Nagashima; M Nakasako; N Dohmae; M Tsujimura; K Takio; M Odaka; M Yohda; N Kamiya; I Endo
Journal:  Nat Struct Biol       Date:  1998-05

4.  Crystal structure of nitrile hydratase reveals a novel iron centre in a novel fold.

Authors:  W Huang; J Jia; J Cummings; M Nelson; G Schneider; Y Lindqvist
Journal:  Structure       Date:  1997-05-15       Impact factor: 5.006

5.  A synthetic analogue of the active site of Fe-containing nitrile hydratase with carboxamido N and thiolato S as donors: synthesis, structure, and reactivities.

Authors:  J C Noveron; M M Olmstead; P K Mascharak
Journal:  J Am Chem Soc       Date:  2001-04-11       Impact factor: 15.419

6.  A stereoselective cobalt-containing nitrile hydratase.

Authors:  M S Payne; S Wu; R D Fallon; G Tudor; B Stieglitz; I M Turner; M J Nelson
Journal:  Biochemistry       Date:  1997-05-06       Impact factor: 3.162

7.  Kinetic and structural studies on roles of the serine ligand and a strictly conserved tyrosine residue in nitrile hydratase.

Authors:  Yasuaki Yamanaka; Koichi Hashimoto; Akashi Ohtaki; Keiichi Noguchi; Masafumi Yohda; Masafumi Odaka
Journal:  J Biol Inorg Chem       Date:  2010-03-10       Impact factor: 3.358

8.  How does single oxygen atom addition affect the properties of an Fe-nitrile hydratase analogue? The compensatory role of the unmodified thiolate.

Authors:  Priscilla Lugo-Mas; Abhishek Dey; Liang Xu; Steven D Davin; Jason Benedict; Werner Kaminsky; Keith O Hodgson; Britt Hedman; Edward I Solomon; Julie A Kovacs
Journal:  J Am Chem Soc       Date:  2006-08-30       Impact factor: 15.419

9.  Crystal structure of cobalt-containing nitrile hydratase.

Authors:  A Miyanaga; S Fushinobu; K Ito; T Wakagi
Journal:  Biochem Biophys Res Commun       Date:  2001-11-16       Impact factor: 3.575

10.  Cloning, nucleotide sequence and expression in Escherichia coli of two cobalt-containing nitrile hydratase genes from Rhodococcus rhodochrous J1.

Authors:  M Kobayashi; M Nishiyama; T Nagasawa; S Horinouchi; T Beppu; H Yamada
Journal:  Biochim Biophys Acta       Date:  1991-12-02
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  6 in total

1.  Characterization and dioxygen reactivity of a new series of coordinatively unsaturated thiolate-ligated manganese(II) complexes.

Authors:  Michael K Coggins; Santiago Toledo; Erika Shaffer; Werner Kaminsky; Jason Shearer; Julie A Kovacs
Journal:  Inorg Chem       Date:  2012-05-29       Impact factor: 5.165

2.  Geometric and electronic structure of a crystallographically characterized thiolate-ligated binuclear peroxo-bridged cobalt(III) complex.

Authors:  Maksym A Dedushko; Dirk Schweitzer; Maike N Blakely; Rodney D Swartz; Werner Kaminsky; Julie A Kovacs
Journal:  J Biol Inorg Chem       Date:  2019-07-24       Impact factor: 3.358

3.  Synthesis and structural characterization of a series of Mn(III)OR complexes, including a water-soluble Mn(III)OH that promotes aerobic hydrogen-atom transfer.

Authors:  Michael K Coggins; Lisa M Brines; Julie A Kovacs
Journal:  Inorg Chem       Date:  2013-10-24       Impact factor: 5.165

4.  Increasing reactivity by incorporating π-acceptor ligands into coordinatively unsaturated thiolate-ligated iron(II) complexes.

Authors:  Santiago Toledo; Penny Chaau Yan Poon; Morgan Gleaves; Julian Rees; Dylan M Rogers; Werner Kaminsky; Julie A Kovacs
Journal:  Inorganica Chim Acta       Date:  2021-04-30       Impact factor: 2.545

5.  Construction of a subunit-fusion nitrile hydratase and discovery of an innovative metal ion transfer pattern.

Authors:  Yuanyuan Xia; Wenjing Cui; Zhongmei Liu; Li Zhou; Youtian Cui; Michihiko Kobayashi; Zhemin Zhou
Journal:  Sci Rep       Date:  2016-01-12       Impact factor: 4.379

6.  Hydration of Aliphatic Nitriles Catalyzed by an Osmium Polyhydride: Evidence for an Alternative Mechanism.

Authors:  Juan C Babón; Miguel A Esteruelas; Ana M López; Enrique Oñate
Journal:  Inorg Chem       Date:  2021-04-27       Impact factor: 5.165

  6 in total

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