Literature DB >> 11452081

Haplotype variation and linkage disequilibrium in 313 human genes.

J C Stephens1, J A Schneider, D A Tanguay, J Choi, T Acharya, S E Stanley, R Jiang, C J Messer, A Chew, J H Han, J Duan, J L Carr, M S Lee, B Koshy, A M Kumar, G Zhang, W R Newell, A Windemuth, C Xu, T S Kalbfleisch, S L Shaner, K Arnold, V Schulz, C M Drysdale, K Nandabalan, R S Judson, G Ruano, G F Vovis.   

Abstract

Variation within genes has important implications for all biological traits. We identified 3899 single nucleotide polymorphisms (SNPs) that were present within 313 genes from 82 unrelated individuals of diverse ancestry, and we organized the SNPs into 4304 different haplotypes. Each gene had several variable SNPs and haplotypes that were present in all populations, as well as a number that were population-specific. Pairs of SNPs exhibited variability in the degree of linkage disequilibrium that was a function of their location within a gene, distance from each other, population distribution, and population frequency. Haplotypes generally had more information content (heterozygosity) than did individual SNPs. Our analysis of the pattern of variation strongly supports the recent expansion of the human population.

Entities:  

Mesh:

Substances:

Year:  2001        PMID: 11452081     DOI: 10.1126/science.1059431

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  230 in total

1.  Score tests for association between traits and haplotypes when linkage phase is ambiguous.

Authors:  Daniel J Schaid; Charles M Rowland; David E Tines; Robert M Jacobson; Gregory A Poland
Journal:  Am J Hum Genet       Date:  2001-12-27       Impact factor: 11.025

2.  Bayesian haplotype inference for multiple linked single-nucleotide polymorphisms.

Authors:  Tianhua Niu; Zhaohui S Qin; Xiping Xu; Jun S Liu
Journal:  Am J Hum Genet       Date:  2001-11-26       Impact factor: 11.025

3.  Homozygosity and linkage disequilibrium.

Authors:  Chiara Sabatti; Neil Risch
Journal:  Genetics       Date:  2002-04       Impact factor: 4.562

4.  Natural variation in human membrane transporter genes reveals evolutionary and functional constraints.

Authors:  Maya K Leabman; Conrad C Huang; Joseph DeYoung; Elaine J Carlson; Travis R Taylor; Melanie de la Cruz; Susan J Johns; Doug Stryke; Michiko Kawamoto; Thomas J Urban; Deanna L Kroetz; Thomas E Ferrin; Andrew G Clark; Neil Risch; Ira Herskowitz; Kathleen M Giacomini
Journal:  Proc Natl Acad Sci U S A       Date:  2003-04-28       Impact factor: 11.205

5.  SNP genotyping on a genome-wide amplified DOP-PCR template.

Authors:  Struan F A Grant; Simone Steinlicht; Ulrike Nentwich; Rainer Kern; Barbara Burwinkel; Ralf Tolle
Journal:  Nucleic Acids Res       Date:  2002-11-15       Impact factor: 16.971

Review 6.  Diversity and duplicity: human FCgamma receptors in host defense and autoimmunity.

Authors:  Robert P Kimberly; Jianming Wu; Andrew W Gibson; Kaihong Su; Hongwe Qin; Xiaoli Li; Jeffrey C Edberg
Journal:  Immunol Res       Date:  2002       Impact factor: 2.829

7.  Genetic ancestry and lower extremity peripheral artery disease in the Multi-Ethnic Study of Atherosclerosis.

Authors:  Matthew A Allison; Carmen A Peralta; Christina L Wassel; Victor Aboyans; Donna K Arnett; Mary Cushman; John Eng; Joachim Ix; Stephen S Rich; Michael H Criqui
Journal:  Vasc Med       Date:  2010-10       Impact factor: 3.239

8.  Single nucleotide variation analysis in 65 candidate genes for CNS disorders in a representative sample of the European population.

Authors:  Yun Freudenberg-Hua; Jan Freudenberg; Nadine Kluck; Sven Cichon; Peter Propping; Markus M Nöthen
Journal:  Genome Res       Date:  2003-10       Impact factor: 9.043

9.  Sequence variation and haplotype structure at the human HFE locus.

Authors:  Christopher Toomajian; Martin Kreitman
Journal:  Genetics       Date:  2002-08       Impact factor: 4.562

10.  A survey of haplotype variants at several disease candidate genes: the importance of rare variants for complex diseases.

Authors:  P-Y Liu; Y-Y Zhang; Y Lu; J-R Long; H Shen; Lan-J Zhao; F-H Xu; P Xiao; D-H Xiong; Y-J Liu; R R Recker; H-W Deng
Journal:  J Med Genet       Date:  2005-03       Impact factor: 6.318

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.