Literature DB >> 11449575

Theoretical hydrogen bonding parameters for drug design.

E Gancia1, J G Montana, D T Manallack.   

Abstract

Hydrogen bonding interactions play a major role in many chemical and biological processes. This article describes the development of a method for the quantitative estimation of the hydrogen-bonding donor strengths of OH/NH moieties and of the hydrogen bonding acceptor strengths of O/N atoms in different chemical structures. The method is based on the correlation of experimentally observed hydrogen-bonding strengths with quantum-mechanical derived properties, calculated on the acceptor atom (for hydrogen-bond acceptors) and on the heavy atom attached to the donor hydrogen (for hydrogen-bond donors). The properties giving the best correlation with the experimental hydrogen bonding scales were electrophilic superdelocalizability and self-atom polarizability. The best equations found have been implemented in a Web-based tool for hydrogen-bond strength prediction.

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Year:  2001        PMID: 11449575     DOI: 10.1016/s1093-3263(00)00084-x

Source DB:  PubMed          Journal:  J Mol Graph Model        ISSN: 1093-3263            Impact factor:   2.518


  8 in total

1.  Fast estimation of hydrogen-bonding donor and acceptor propensities: a GMIPp study.

Authors:  Albert Salichs; M López; V Segarra; Modesto Orozco; F Javier Luque
Journal:  J Comput Aided Mol Des       Date:  2002 Aug-Sep       Impact factor: 3.686

2.  A new method for estimating the importance of hydrogen-bonding groups in the binding site of a protein.

Authors:  Matthew D Kelly; Ricardo L Mancera
Journal:  J Comput Aided Mol Des       Date:  2003-07       Impact factor: 3.686

3.  A theoretical study of red-shifting and blue-shifting hydrogen bonds occurring between imidazolidine derivatives and PEG/PVP polymers.

Authors:  Boaz G Oliveira; Maria C A Lima; Ivan R Pitta; Suely L Galdino; Marcelo Z Hernandes
Journal:  J Mol Model       Date:  2009-06-12       Impact factor: 1.810

Review 4.  A medicinal chemist's guide to molecular interactions.

Authors:  Caterina Bissantz; Bernd Kuhn; Martin Stahl
Journal:  J Med Chem       Date:  2010-07-22       Impact factor: 7.446

5.  Outliers in SAR and QSAR: 3. Importance of considering the role of water molecules in protein-ligand interactions and quantitative structure-activity relationship studies.

Authors:  Ki Hwan Kim
Journal:  J Comput Aided Mol Des       Date:  2021-03-13       Impact factor: 3.686

6.  Computer-Aided and AILDE Approaches to Design Novel 4-Hydroxyphenylpyruvate Dioxygenase Inhibitors.

Authors:  Juan Shi; Shuang Gao; Jia-Yu Wang; Tong Ye; Ming-Li Yue; Ying Fu; Fei Ye
Journal:  Int J Mol Sci       Date:  2022-07-15       Impact factor: 6.208

7.  Structure based virtual screening identifies small molecule effectors for the sialoglycan binding protein Hsa.

Authors:  Rupesh Agarwal; Barbara A Bensing; Dehui Mi; Paige N Vinson; Jerome Baudry; Tina M Iverson; Jeremy C Smith
Journal:  Biochem J       Date:  2020-10-16       Impact factor: 3.766

8.  Relationship between physicochemical properties and herbicidal activity of 1,2,5-oxadiazole N-oxide derivatives.

Authors:  Luciana A Fernandez; Marisa R Santo; Mario Reta; Liliana Giacomelli; Rosa Cattana; Juana J Silber; Mariela Risso; Hugo Cerecetto; Mercedes Gonzalez; Claudio Olea-Azar
Journal:  Molecules       Date:  2005-09-30       Impact factor: 4.411

  8 in total

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