Literature DB >> 11439022

Plasmid systems to study RNA function in Escherichia coli.

K Gabriel1, W H McClain.   

Abstract

Determining the functional activity of an essential RNA in vivo presents special challenges. We have devised an in vivo analysis of alternative forms of an essential tRNA gene in Escherichia coli knockout cells using either a plasmid switch or a regulated two-plasmid system. The model system is presented together with a description of the new plasmids and procedures necessary to effect these analyses. The system is readily adaptable to non-essential RNAs. Copyright 2001 Academic Press.

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Year:  2001        PMID: 11439022     DOI: 10.1006/jmbi.2001.4786

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  7 in total

1.  The structure of an AspRS-tRNA(Asp) complex reveals a tRNA-dependent control mechanism.

Authors:  L Moulinier; S Eiler; G Eriani; J Gangloff; J C Thierry; K Gabriel; W H McClain; D Moras
Journal:  EMBO J       Date:  2001-09-17       Impact factor: 11.598

2.  Structure-function analysis of tRNA(Gln) in an Escherichia coli knockout strain.

Authors:  William H McClain; Kay Gabriel; Dennis Lee; Sharee Otten
Journal:  RNA       Date:  2004-05       Impact factor: 4.942

3.  Multiple site-selective insertions of noncanonical amino acids into sequence-repetitive polypeptides.

Authors:  I-Lin Wu; Melissa A Patterson; Holly E Carpenter Desai; Ryan A Mehl; Gianluca Giorgi; Vincent P Conticello
Journal:  Chembiochem       Date:  2013-04-26       Impact factor: 3.164

4.  Recognition of acceptor-stem structure of tRNA(Asp) by Escherichia coli aspartyl-tRNA synthetase.

Authors:  Hyunsic Choi; Kay Gabriel; Jay Schneider; Sharee Otten; William H McClain
Journal:  RNA       Date:  2003-04       Impact factor: 4.942

5.  Aptamer redesigned tRNA is nonfunctional and degraded in cells.

Authors:  Dennis Lee; William H McClain
Journal:  RNA       Date:  2004-01       Impact factor: 4.942

6.  In vivo identification of essential nucleotides in tRNALeu to its functions by using a constructed yeast tRNALeu knockout strain.

Authors:  Qian Huang; Peng Yao; Gilbert Eriani; En-Duo Wang
Journal:  Nucleic Acids Res       Date:  2012-08-23       Impact factor: 16.971

7.  A genetically encoded fluorescent tRNA is active in live-cell protein synthesis.

Authors:  Isao Masuda; Takao Igarashi; Reiko Sakaguchi; Ram G Nitharwal; Ryuichi Takase; Kyu Young Han; Benjamin J Leslie; Cuiping Liu; Howard Gamper; Taekjip Ha; Suparna Sanyal; Ya-Ming Hou
Journal:  Nucleic Acids Res       Date:  2017-04-20       Impact factor: 16.971

  7 in total

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