Literature DB >> 11433356

Genome annotation: from sequence to biology.

L Stein1.   

Abstract

The genome sequence of an organism is an information resource unlike any that biologists have previously had access to. But the value of the genome is only as good as its annotation. It is the annotation that bridges the gap from the sequence to the biology of the organism. The aim of high-quality annotation is to identify the key features of the genome - in particular, the genes and their products. The tools and resources for annotation are developing rapidly, and the scientific community is becoming increasingly reliant on this information for all aspects of biological research.

Mesh:

Year:  2001        PMID: 11433356     DOI: 10.1038/35080529

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  84 in total

1.  MODBASE, a database of annotated comparative protein structure models.

Authors:  Ursula Pieper; Narayanan Eswar; Ashley C Stuart; Valentin A Ilyin; Andrej Sali
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

Review 2.  Science, medicine, and the future: Bioinformatics.

Authors:  Ardeshir Bayat
Journal:  BMJ       Date:  2002-04-27

3.  Comprehensive analysis of orthologous protein domains using the HOPS database.

Authors:  Christian E V Storm; Erik L L Sonnhammer
Journal:  Genome Res       Date:  2003-10       Impact factor: 9.043

Review 4.  Genome informatics: current status and future prospects.

Authors:  Raimond L Winslow; Mark S Boguski
Journal:  Circ Res       Date:  2003-05-16       Impact factor: 17.367

5.  GANESH: software for customized annotation of genome regions.

Authors:  Derek Huntley; Holger Hummerich; Damian Smedley; Sasivimol Kittivoravitkul; Mark McCarthy; Peter Little; Marek Sergot
Journal:  Genome Res       Date:  2003-09       Impact factor: 9.043

6.  An intermediate grade of finished genomic sequence suitable for comparative analyses.

Authors:  Robert W Blakesley; Nancy F Hansen; James C Mullikin; Pamela J Thomas; Jennifer C McDowell; Baishali Maskeri; Alice C Young; Beatrice Benjamin; Shelise Y Brooks; Bradley I Coleman; Jyoti Gupta; Shi-Ling Ho; Eric M Karlins; Quino L Maduro; Sirintorn Stantripop; Cyrus Tsurgeon; Jennifer L Vogt; Michelle A Walker; Catherine A Masiello; Xiaobin Guan; Gerard G Bouffard; Eric D Green
Journal:  Genome Res       Date:  2004-10-12       Impact factor: 9.043

7.  Sequence variation, differential expression, and divergent evolution in starch-related genes among accessions of Arabidopsis thaliana.

Authors:  Sandra Schwarte; Fanny Wegner; Katja Havenstein; Detlef Groth; Martin Steup; Ralph Tiedemann
Journal:  Plant Mol Biol       Date:  2015-02-08       Impact factor: 4.076

8.  Ustilago maydis transcript features identified through full-length cDNA analysis.

Authors:  Colleen E Doyle; Michael E Donaldson; Erin N Morrison; Barry J Saville
Journal:  Mol Genet Genomics       Date:  2011-07-13       Impact factor: 3.291

9.  GermOnline, a cross-species community knowledgebase on germ cell differentiation.

Authors:  C Wiederkehr; R Basavaraj; C Sarrauste de Menthière; L Hermida; R Koch; U Schlecht; A Amon; S Brachat; M Breitenbach; P Briza; S Caburet; M Cherry; R Davis; A Deutschbauer; H G Dickinson; T Dumitrescu; M Fellous; A Goldman; J A Grootegoed; R Hawley; R Ishii; B Jégou; R J Kaufman; F Klein; N Lamb; B Maro; K Nasmyth; A Nicolas; T Orr-Weaver; P Philippsen; C Pineau; K P Rabitsch; V Reinke; H Roest; W Saunders; M Schröder; T Schedl; M Siep; A Villeneuve; D J Wolgemuth; M Yamamoto; D Zickler; R E Esposito; M Primig
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

10.  Metabolomics approach for determining growth-specific metabolites based on Fourier transform ion cyclotron resonance mass spectrometry.

Authors:  Hiroki Takahashi; Kosuke Kai; Yoko Shinbo; Kenichi Tanaka; Daisaku Ohta; Taku Oshima; Md Altaf-Ul-Amin; Ken Kurokawa; Naotake Ogasawara; Shigehiko Kanaya
Journal:  Anal Bioanal Chem       Date:  2008-06-16       Impact factor: 4.142

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