Literature DB >> 11427893

Structural basis for substrate specificities of cellular deoxyribonucleoside kinases.

K Johansson1, S Ramaswamy, C Ljungcrantz, W Knecht, J Piskur, B Munch-Petersen, S Eriksson, H Eklund.   

Abstract

Deoxyribonucleoside kinases phosphorylate deoxyribonucleosides and activate a number of medically important nucleoside analogs. Here we report the structure of the Drosophila deoxyribonucleoside kinase with deoxycytidine bound at the nucleoside binding site and that of the human deoxyguanosine kinase with ATP at the nucleoside substrate binding site. Compared to the human kinase, the Drosophila kinase has a wider substrate cleft, which may be responsible for the broad substrate specificity of this enzyme. The human deoxyguanosine kinase is highly specific for purine substrates; this is apparently due to the presence of Arg 118, which provides favorable hydrogen bonding interactions with the substrate. The two new structures provide an explanation for the substrate specificity of cellular deoxyribonucleoside kinases.

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Year:  2001        PMID: 11427893     DOI: 10.1038/89661

Source DB:  PubMed          Journal:  Nat Struct Biol        ISSN: 1072-8368


  27 in total

1.  Oxidative stress induced S-glutathionylation and proteolytic degradation of mitochondrial thymidine kinase 2.

Authors:  Ren Sun; Staffan Eriksson; Liya Wang
Journal:  J Biol Chem       Date:  2012-06-01       Impact factor: 5.157

2.  3'-(1,2,3-Triazol-1-yl)-3'-deoxythymidine analogs as substrates for human and Ureaplasma parvum thymidine kinase for structure-activity investigations.

Authors:  Jay Lin; Vincent Roy; Liya Wang; Li You; Luigi A Agrofoglio; Dominique Deville-Bonne; Tamara R McBrayer; Steven J Coats; Raymond F Schinazi; Staffan Eriksson
Journal:  Bioorg Med Chem       Date:  2010-03-15       Impact factor: 3.641

3.  Non-homologous recombination of deoxyribonucleoside kinases from human and Drosophila melanogaster yields human-like enzymes with novel activities.

Authors:  Monica L Gerth; Stefan Lutz
Journal:  J Mol Biol       Date:  2007-05-22       Impact factor: 5.469

4.  Sequence analysis of a non-classified, non-occluded DNA virus that causes salivary gland hypertrophy of Musca domestica, MdSGHV.

Authors:  Alejandra Garcia-Maruniak; James E Maruniak; William Farmerie; Drion G Boucias
Journal:  Virology       Date:  2008-05-21       Impact factor: 3.616

Review 5.  Overview of protein structural and functional folds.

Authors:  Peter D Sun; Christine E Foster; Jeffrey C Boyington
Journal:  Curr Protoc Protein Sci       Date:  2004-05

6.  Systematic exploration of active site mutations on human deoxycytidine kinase substrate specificity.

Authors:  Pinar Iyidogan; Stefan Lutz
Journal:  Biochemistry       Date:  2008-03-25       Impact factor: 3.162

7.  The phylogenetic distribution and evolution of enzymes within the thymidine kinase 2-like gene family in metazoa.

Authors:  Anke Konrad; Jason Lai; Zeeshan Mutahir; Jure Piškur; David A Liberles
Journal:  J Mol Evol       Date:  2014-02-06       Impact factor: 2.395

8.  Mosquito has a single multisubstrate deoxyribonucleoside kinase characterized by unique substrate specificity.

Authors:  Wolfgang Knecht; Gitte Ebert Petersen; Michael Paolo Bastner Sandrini; Leif Søndergaard; Birgitte Munch-Petersen; Jure Piskur
Journal:  Nucleic Acids Res       Date:  2003-03-15       Impact factor: 16.971

9.  Recurrent recessive mutation in deoxyguanosine kinase causes idiopathic noncirrhotic portal hypertension.

Authors:  Sílvia Vilarinho; Sinan Sari; Güldal Yilmaz; Amy L Stiegler; Titus J Boggon; Dhanpat Jain; Gulen Akyol; Buket Dalgic; Murat Günel; Richard P Lifton
Journal:  Hepatology       Date:  2016-03-31       Impact factor: 17.425

10.  Kinetic properties of mutant deoxyguanosine kinase in a case of reversible hepatic mtDNA depletion.

Authors:  Bénédicte Mousson de Camaret; Jan-Willem Taanman; Sylvie Padet; Maïté Chassagne; Martine Mayençon; Pascale Clerc-Renaud; Ginette Mandon; Marie-Thérèse Zabot; Alain Lachaux; Dominique Bozon
Journal:  Biochem J       Date:  2007-03-01       Impact factor: 3.857

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