Literature DB >> 11419617

Spatio-temporal pattern formation on spherical surfaces: numerical simulation and application to solid tumour growth.

M A Chaplain1, M Ganesh, I G Graham.   

Abstract

In this paper we examine spatio-temporal pattern formation in reaction-diffusion systems on the surface of the unit sphere in 3D. We first generalise the usual linear stability analysis for a two-chemical system to this geometrical context. Noting the limitations of this approach (in terms of rigorous prediction of spatially heterogeneous steady-states) leads us to develop, as an alternative, a novel numerical method which can be applied to systems of any dimension with any reaction kinetics. This numerical method is based on the method of lines with spherical harmonics and uses fast Fourier transforms to expedite the computation of the reaction kinetics. Numerical experiments show that this method efficiently computes the evolution of spatial patterns and yields numerical results which coincide with those predicted by linear stability analysis when the latter is known. Using these tools, we then investigate the rĵle that pre-pattern (Turing) theory may play in the growth and development of solid tumours. The theoretical steady-state distributions of two chemicals (one a growth activating factor, the other a growth inhibitory factor) are compared with the experimentally and clinically observed spatial heterogeneity of cancer cells in small, solid spherical tumours such as multicell spheroids and carcinomas. Moreover, we suggest a number of chemicals which are known to be produced by tumour cells (autocrine growth factors), and are also known to interact with one another, as possible growth promoting and growth inhibiting factors respectively. In order to connect more concretely the numerical method to this application, we compute spatially heterogeneous patterns on the surface of a growing spherical tumour, modelled as a moving-boundary problem. The numerical results strongly support the theoretical expectations in this case. Finally in an appendix we give a brief analysis of the numerical method.

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Year:  2001        PMID: 11419617     DOI: 10.1007/s002850000067

Source DB:  PubMed          Journal:  J Math Biol        ISSN: 0303-6812            Impact factor:   2.259


  15 in total

1.  Stability analysis of non-autonomous reaction-diffusion systems: the effects of growing domains.

Authors:  Anotida Madzvamuse; Eamonn A Gaffney; Philip K Maini
Journal:  J Math Biol       Date:  2009-08-29       Impact factor: 2.259

2.  The surface finite element method for pattern formation on evolving biological surfaces.

Authors:  R Barreira; C M Elliott; A Madzvamuse
Journal:  J Math Biol       Date:  2011-01-28       Impact factor: 2.259

3.  A Lagrangian particle method for reaction-diffusion systems on deforming surfaces.

Authors:  Michael Bergdorf; Ivo F Sbalzarini; Petros Koumoutsakos
Journal:  J Math Biol       Date:  2009-12-18       Impact factor: 2.259

4.  The competitive dynamics between tumor cells, a replication-competent virus and an immune response.

Authors:  Youshan Tao; Qian Guo
Journal:  J Math Biol       Date:  2005-03-15       Impact factor: 2.259

5.  Nonlinear modelling of cancer: bridging the gap between cells and tumours.

Authors:  J S Lowengrub; H B Frieboes; F Jin; Y-L Chuang; X Li; P Macklin; S M Wise; V Cristini
Journal:  Nonlinearity       Date:  2010

6.  Cross-scale, cross-pathway evaluation using an agent-based non-small cell lung cancer model.

Authors:  Zhihui Wang; Christina M Birch; Jonathan Sagotsky; Thomas S Deisboeck
Journal:  Bioinformatics       Date:  2009-07-04       Impact factor: 6.937

Review 7.  Mathematical modeling as a tool for planning anticancer therapy.

Authors:  Andrzej Swierniak; Marek Kimmel; Jaroslaw Smieja
Journal:  Eur J Pharmacol       Date:  2009-10-13       Impact factor: 4.432

8.  Module-based multiscale simulation of angiogenesis in skeletal muscle.

Authors:  Gang Liu; Amina A Qutub; Prakash Vempati; Feilim Mac Gabhann; Aleksander S Popel
Journal:  Theor Biol Med Model       Date:  2011-04-04       Impact factor: 2.432

9.  A biochemical hypothesis on the formation of fingerprints using a turing patterns approach.

Authors:  Diego A Garzón-Alvarado; Angelica M Ramírez Martinez
Journal:  Theor Biol Med Model       Date:  2011-06-28       Impact factor: 2.432

10.  Modelling non-homogeneous stochastic reaction-diffusion systems: the case study of gemcitabine-treated non-small cell lung cancer growth.

Authors:  Paola Lecca; Daniele Morpurgo
Journal:  BMC Bioinformatics       Date:  2012-09-07       Impact factor: 3.169

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