Literature DB >> 11410666

A mRNA determinant of gRNA-directed kinetoplastid editing.

A L Kabb1, L M Oppegard, B A McKenzie, G J Connell.   

Abstract

Several mitochondrial mRNAs of the kinetoplastid protozoa do not encode a functional open reading frame until they have been edited through the addition or deletion of U nucleotides at specific sites. Genetic information specifying the location and extent of editing is present on guide RNAs (gRNAs). The sequence adjacent to most mRNA editing sites has a high purine content which previously has been proposed to facilitate the editing reaction through base-pairing to a poly(U) tail at the 3' end of the gRNA. We demonstrate here that gRNA binding alone is insufficient to create an editing site and that the mRNA sequence near an editing site is an additional determinant affecting the efficiency of the reaction.

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Year:  2001        PMID: 11410666      PMCID: PMC55732          DOI: 10.1093/nar/29.12.2575

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  14 in total

1.  Trypanosome RNA editing: simple guide RNA features enhance U deletion 100-fold.

Authors:  J Cruz-Reyes; A Zhelonkina; L Rusche; B Sollner-Webb
Journal:  Mol Cell Biol       Date:  2001-02       Impact factor: 4.272

2.  Activation of guide RNA-directed editing of a cytochrome b mRNA.

Authors:  L M Oppegard; A L Kabb; G J Connell
Journal:  J Biol Chem       Date:  2000-10-27       Impact factor: 5.157

3.  A model for RNA editing in kinetoplastid mitochondria: "guide" RNA molecules transcribed from maxicircle DNA provide the edited information.

Authors:  B Blum; N Bakalara; L Simpson
Journal:  Cell       Date:  1990-01-26       Impact factor: 41.582

4.  RNA editing: a mechanism for gRNA-specified uridylate insertion into precursor mRNA.

Authors:  M L Kable; S D Seiwert; S Heidmann; K Stuart
Journal:  Science       Date:  1996-08-30       Impact factor: 47.728

5.  Guide RNA-directed uridine insertion RNA editing in vitro.

Authors:  E M Byrne; G J Connell; L Simpson
Journal:  EMBO J       Date:  1996-12-02       Impact factor: 11.598

6.  Sequence bias in edited kinetoplastid RNAs.

Authors:  M L Burgess; K Stuart
Journal:  RNA       Date:  2000-11       Impact factor: 4.942

7.  Direct visualization of uridylate deletion in vitro suggests a mechanism for kinetoplastid RNA editing.

Authors:  S D Seiwert; S Heidmann; K Stuart
Journal:  Cell       Date:  1996-03-22       Impact factor: 41.582

8.  In vitro uridine insertion RNA editing mediated by cis-acting guide RNAs.

Authors:  S T Kapushoc; L Simpson
Journal:  RNA       Date:  1999-05       Impact factor: 4.942

9.  Oligoribonucleotide synthesis using T7 RNA polymerase and synthetic DNA templates.

Authors:  J F Milligan; D R Groebe; G W Witherell; O C Uhlenbeck
Journal:  Nucleic Acids Res       Date:  1987-11-11       Impact factor: 16.971

10.  Improved free-energy parameters for predictions of RNA duplex stability.

Authors:  S M Freier; R Kierzek; J A Jaeger; N Sugimoto; M H Caruthers; T Neilson; D H Turner
Journal:  Proc Natl Acad Sci U S A       Date:  1986-12       Impact factor: 11.205

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  6 in total

1.  The specificity of nucleotide removal during RNA editing in Trypanosoma brucei.

Authors:  S D Lawson; R P Igo; R Salavati; K D Stuart
Journal:  RNA       Date:  2001-12       Impact factor: 4.942

2.  RBP38, a novel RNA-binding protein from trypanosomatid mitochondria, modulates RNA stability.

Authors:  Sandro Sbicego; Juan D Alfonzo; Antonio M Estévez; Mary Anne T Rubio; Xuedong Kang; Christoph W Turck; Marian Peris; Larry Simpson
Journal:  Eukaryot Cell       Date:  2003-06

Review 3.  Uridine insertion/deletion RNA editing in trypanosome mitochondria: a complex business.

Authors:  Larry Simpson; Sandro Sbicego; Ruslan Aphasizhev
Journal:  RNA       Date:  2003-03       Impact factor: 4.942

4.  Sequence and structural requirements for optimal guide RNA-directed insertional editing within Leishmania tarentolae.

Authors:  Raj D Pai; Lisa M Oppegard; Gregory J Connell
Journal:  RNA       Date:  2003-04       Impact factor: 4.942

5.  The impact of mRNA structure on guide RNA targeting in kinetoplastid RNA editing.

Authors:  Larissa Reifur; Laura E Yu; Jorge Cruz-Reyes; Michelle Vanhartesvelt; Donna J Koslowsky
Journal:  PLoS One       Date:  2010-08-17       Impact factor: 3.240

6.  Minimal pre-mRNA substrates with natural and converted sites for full-round U insertion and U deletion RNA editing in trypanosomes.

Authors:  Catherine Cifuentes-Rojas; Kari Halbig; Anastasia Sacharidou; Monica De Nova-Ocampo; Jorge Cruz-Reyes
Journal:  Nucleic Acids Res       Date:  2005-11-23       Impact factor: 16.971

  6 in total

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