Literature DB >> 11384388

Heavy-atom skeleton quantization and proton tunneling in "intermediate-barrier" hydrogen bonds.

M E Tuckerman1, D Marx.   

Abstract

Quantum effects on proton transfer through barriers of several kcal/mol in hydrogen bonds are investigated theoretically in malonaldehyde. Such "intermediate-barrier" proton transfer processes play a key role in the catalytic activity of some enzymes. Tunneling is shown to be significant in this reaction even at room temperature. More importantly, the quantum nature of the heavy molecular frame atoms is found to substantially enhance proton tunneling. These findings have far-reaching implications for common modeling strategies of proton transfer in complex systems such as biomolecules.

Entities:  

Year:  2001        PMID: 11384388     DOI: 10.1103/PhysRevLett.86.4946

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  12 in total

1.  More than one dynamic crossover in protein hydration water.

Authors:  Marco G Mazza; Kevin Stokely; Sara E Pagnotta; Fabio Bruni; H Eugene Stanley; Giancarlo Franzese
Journal:  Proc Natl Acad Sci U S A       Date:  2011-11-30       Impact factor: 11.205

2.  Transition state theory can be used in studies of enzyme catalysis: lessons from simulations of tunnelling and dynamical effects in lipoxygenase and other systems.

Authors:  Mats H M Olsson; Janez Mavri; Arieh Warshel
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2006-08-29       Impact factor: 6.237

3.  Small temperature dependence of the kinetic isotope effect for the hydride transfer reaction catalyzed by Escherichia coli dihydrofolate reductase.

Authors:  Jingzhi Pu; Shuhua Ma; Jiali Gao; Donald G Truhlar
Journal:  J Phys Chem B       Date:  2005-05-12       Impact factor: 2.991

4.  Combined QM/MM and path integral simulations of kinetic isotope effects in the proton transfer reaction between nitroethane and acetate ion in water.

Authors:  Jiali Gao; Kin-Yiu Wong; Dan T Major
Journal:  J Comput Chem       Date:  2008-03       Impact factor: 3.376

5.  Quantum behavior of water protons in protein hydration shell.

Authors:  S E Pagnotta; F Bruni; R Senesi; A Pietropaolo
Journal:  Biophys J       Date:  2009-03-04       Impact factor: 4.033

6.  Exact Relation between Potential of Mean Force and Free-Energy Profile.

Authors:  Kin-Yiu Wong; Darrin M York
Journal:  J Chem Theory Comput       Date:  2012-09-06       Impact factor: 6.006

7.  Proton Transfer Studied Using a Combined Ab Initio Reactive Potential Energy Surface with Quantum Path Integral Methodology.

Authors:  Kim F Wong; Jason L Sonnenberg; Francesco Paesani; Takeshi Yamamoto; Jiří Vaníček; Wei Zhang; H Bernhard Schlegel; David A Case; Thomas E Cheatham; William H Miller; Gregory A Voth
Journal:  J Chem Theory Comput       Date:  2010-09-14       Impact factor: 6.006

8.  Structures and spectral signatures of protonated water networks in bacteriorhodopsin.

Authors:  Gerald Mathias; Dominik Marx
Journal:  Proc Natl Acad Sci U S A       Date:  2007-04-16       Impact factor: 11.205

9.  Bypassing the Kohn-Sham equations with machine learning.

Authors:  Felix Brockherde; Leslie Vogt; Li Li; Mark E Tuckerman; Kieron Burke; Klaus-Robert Müller
Journal:  Nat Commun       Date:  2017-10-11       Impact factor: 14.919

10.  Modeling quantum nuclei with perturbed path integral molecular dynamics.

Authors:  Igor Poltavsky; Alexandre Tkatchenko
Journal:  Chem Sci       Date:  2015-10-30       Impact factor: 9.825

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