Literature DB >> 11371584

Evolution of proteasomal ATPases.

K Wollenberg1, J C Swaffield.   

Abstract

In eukaryotic cells, the majority of proteins are degraded via the ATP-dependent ubiquitin/26S proteasome pathway. The proteasome is the proteolytic component of the pathway. It is a very large complex with a mass of around 2.5 MDa, consisting of at least 62 proteins encoded by 31 genes. The eukaryotic proteasome has evolved from a simpler archaebacterial form, similar in structure but containing only three different peptides. One of these peptides is an ATPase belonging to the AAA (Triple-A) family of ATPASES: Gene duplication and diversification has resulted in six paralogous ATPases being present in the eukaryotic proteasome. While sequence analysis studies clearly show that the six eukaryotic proteasomal ATPases have evolved from the single archaebacterial proteasomal ATPase, the deep node structures of the phylogenetic constructions lack resolution. Incorporating physical data to provide support for alternative phylogenetic hypotheses, we have constructed a model of a possible evolutionary history of the proteasomal ATPASES:

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Year:  2001        PMID: 11371584     DOI: 10.1093/oxfordjournals.molbev.a003897

Source DB:  PubMed          Journal:  Mol Biol Evol        ISSN: 0737-4038            Impact factor:   16.240


  14 in total

Review 1.  Degradation or maintenance: actions of the ubiquitin system on eukaryotic chromatin.

Authors:  Helle D Ulrich
Journal:  Eukaryot Cell       Date:  2002-02

2.  Bioinformatic analysis of functional differences between the immunoproteasome and the constitutive proteasome.

Authors:  Can Kesmir; Vera van Noort; Rob J de Boer; Paulien Hogeweg
Journal:  Immunogenetics       Date:  2003-08-30       Impact factor: 2.846

3.  Molecular architecture of the 26S proteasome holocomplex determined by an integrative approach.

Authors:  Keren Lasker; Friedrich Förster; Stefan Bohn; Thomas Walzthoeni; Elizabeth Villa; Pia Unverdorben; Florian Beck; Ruedi Aebersold; Andrej Sali; Wolfgang Baumeister
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-23       Impact factor: 11.205

4.  Dual functions of the Hsm3 protein in chaperoning and scaffolding regulatory particle subunits during the proteasome assembly.

Authors:  Marie-Bénédicte Barrault; Nicolas Richet; Chloe Godard; Brice Murciano; Benoît Le Tallec; Erwann Rousseau; Pierre Legrand; Jean-Baptiste Charbonnier; Marie-Hélène Le Du; Raphaël Guérois; Françoise Ochsenbein; Anne Peyroche
Journal:  Proc Natl Acad Sci U S A       Date:  2012-03-29       Impact factor: 11.205

Review 5.  Assembly, structure, and function of the 26S proteasome.

Authors:  Lynn Bedford; Simon Paine; Paul W Sheppard; R John Mayer; Jeroen Roelofs
Journal:  Trends Cell Biol       Date:  2010-04-26       Impact factor: 20.808

6.  Rooting the tree of life by transition analyses.

Authors:  Thomas Cavalier-Smith
Journal:  Biol Direct       Date:  2006-07-11       Impact factor: 4.540

7.  Purification, crystallization and preliminary X-ray diffraction analysis of the non-ATPase subunit Nas6 in complex with the ATPase subunit Rpt3 of the 26S proteasome from Saccharomyces cerevisiae.

Authors:  Yoshihiro Nakamura; Takashi Umehara; Akiko Tanaka; Masami Horikoshi; Balasundaram Padmanabhan; Shigeyuki Yokoyama
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2007-02-10

8.  Differential regulation of the PanA and PanB proteasome-activating nucleotidase and 20S proteasomal proteins of the haloarchaeon Haloferax volcanii.

Authors:  Christopher J Reuter; Steven J Kaczowka; Julie A Maupin-Furlow
Journal:  J Bacteriol       Date:  2004-11       Impact factor: 3.490

Review 9.  Molecular architecture and assembly of the eukaryotic proteasome.

Authors:  Robert J Tomko; Mark Hochstrasser
Journal:  Annu Rev Biochem       Date:  2013-03-13       Impact factor: 23.643

10.  Topological models of heteromeric protein assemblies from mass spectrometry: application to the yeast eIF3:eIF5 complex.

Authors:  Argyris Politis; Carla Schmidt; Elina Tjioe; Alan M Sandercock; Keren Lasker; Yuliya Gordiyenko; Daniel Russel; Andrej Sali; Carol V Robinson
Journal:  Chem Biol       Date:  2014-12-24
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