Literature DB >> 11371208

Mechanistic studies of reaction coupling in Glu-tRNAGln amidotransferase.

K Y Horiuchi1, M R Harpel, L Shen, Y Luo, K C Rogers, R A Copeland.   

Abstract

Organisms lacking Gln-tRNA synthetase produce Gln-tRNA(Gln) from misacylated Glu-tRNA(Gln) through the transamidation activity of Glu-tRNA(Gln) amidotransferase (Glu-AdT). Glu-AdT hydrolyzes Gln to Glu and NH(3), using the latter product to transamidate Glu-tRNA(Gln) in concert with ATP hydrolysis. In the absence of the amido acceptor, Glu-tRNA(Gln), the enzyme has basal glutaminase activity that is unaffected by ATP. However, Glu-tRNA(Gln) activates the glutaminase activity of the enzyme about 10-fold; addition of ATP elicits a further 7-fold increase. These enhanced activities mainly result from increases in k(cat) without significant effects on the K(m) for Gln. To determine if ATP binding is sufficient to induce full activation, we tested a variety of ATP analogues for their ability to stimulate tRNA-dependent glutaminase activity. Despite their binding to Glu-AdT, none of the ATP analogues induced glutaminase activation except ATP-gammaS, which stimulates glutaminase activity to the same level as ATP, but without formation of Gln-tRNA(Gln). ATP-gammaS hydrolysis by Glu-AdT is very low in the absence or presence of Glu-tRNA(Gln) and Gln. In contrast, Glu-tRNA(Gln) stimulates basal ATP hydrolysis slightly, but full activation of ATP hydrolysis requires both Gln and Glu-tRNA(Gln). Simultaneous monitoring of ATP or ATP-gammaS hydrolysis and glutaminase and transamidase activities reveals tight coupling among these activities in the presence of ATP, with all three activities waning in concert when Glu-tRNA(Gln) levels become exhausted. ATP-gammaS stimulates the glutaminase activity to an extent similar to that with ATP, but without concomitant transamidase activity and with a very low level of ATP-gammaS hydrolysis. This uncoupling between ATP-gammaS hydrolysis and glutaminase activities suggests that the activation of glutaminase activity by ATP or ATP-gammaS, together with Glu-tRNA(Gln), results either from an allosteric effect due simply to binding of these analogues to the enzyme or from some structural changes that attend ATP or ATP-gammaS hydrolysis.

Entities:  

Mesh:

Substances:

Year:  2001        PMID: 11371208     DOI: 10.1021/bi002599l

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  14 in total

1.  A thin-layer electrophoretic assay for Asp-tRNAAsn/Glu-tRNAGln amidotransferase.

Authors:  Terry J T Cathopoulis; Pitak Chuawong; Tamara L Hendrickson
Journal:  Anal Biochem       Date:  2006-11-03       Impact factor: 3.365

2.  Two-codon T-box riboswitch binding two tRNAs.

Authors:  Nizar Y Saad; Vassiliki Stamatopoulou; Mélanie Brayé; Denis Drainas; Constantinos Stathopoulos; Hubert Dominique Becker
Journal:  Proc Natl Acad Sci U S A       Date:  2013-07-15       Impact factor: 11.205

3.  Neutron crystallographic study of heterotrimeric glutamine amidotransferase CAB.

Authors:  Long Li; Motoyasu Adachi; Jian Yu; Koji Kato; Akira Shinoda; Andreas Ostermann; Tobias E Schrader; Toyoyuki Ose; Min Yao
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2019-02-21       Impact factor: 1.056

4.  Mycobacterial ubiquitin-like protein ligase PafA follows a two-step reaction pathway with a phosphorylated pup intermediate.

Authors:  Ethan Guth; Michael Thommen; Eilika Weber-Ban
Journal:  J Biol Chem       Date:  2010-11-16       Impact factor: 5.157

5.  The kinase activity of the Helicobacter pylori Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase is sensitive to distal mutations in its putative ammonia tunnel.

Authors:  Liangjun Zhao; Sajeewa W Dewage; Michael J Bell; Keng-Ming Chang; Shirin Fatma; Nilesh Joshi; Gayathri Silva; G Andrés Cisneros; Tamara L Hendrickson
Journal:  Biochemistry       Date:  2011-12-29       Impact factor: 3.162

Review 6.  Prokaryotic ubiquitin-like protein modification.

Authors:  Julie A Maupin-Furlow
Journal:  Annu Rev Microbiol       Date:  2014-05-29       Impact factor: 15.500

Review 7.  Amino acid modifications on tRNA.

Authors:  Jing Yuan; Kelly Sheppard; Dieter Söll
Journal:  Acta Biochim Biophys Sin (Shanghai)       Date:  2008-07       Impact factor: 3.848

8.  Optimized CGenFF force-field parameters for acylphosphate and N-phosphonosulfonimidoyl functional groups.

Authors:  Lamees Hegazy; Nigel G J Richards
Journal:  J Mol Model       Date:  2013-10-02       Impact factor: 1.810

9.  Nucleotide sequence of plasmid pCNB1 from comamonas strain CNB-1 reveals novel genetic organization and evolution for 4-chloronitrobenzene degradation.

Authors:  Ying-Fei Ma; Jian-Feng Wu; Sheng-Yue Wang; Cheng-Ying Jiang; Yun Zhang; Su-Wei Qi; Lei Liu; Guo-Ping Zhao; Shuang-Jiang Liu
Journal:  Appl Environ Microbiol       Date:  2007-05-25       Impact factor: 4.792

10.  Assays for transfer RNA-dependent amino acid biosynthesis.

Authors:  Kelly Sheppard; Pierre-Marie Akochy; Dieter Söll
Journal:  Methods       Date:  2008-02       Impact factor: 3.608

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.