Literature DB >> 11370779

13C(alpha) and 13C(beta) chemical shifts as a tool to delineate beta-hairpin structures in peptides.

C M Santiveri1, M Rico, M A Jiménez.   

Abstract

Unravelling the factors that contribute to the formation and the stability of beta-sheet structure in peptides is a subject of great current interest. A beta-hairpin, the smallest beta-sheet motif, consists of two antiparallel hydrogen-bonded beta-strands linked by a loop region. We have performed a statistical analysis on protein beta-hairpins showing that the most abundant types of beta-hairpins, 2:2, 3:5 and 4:4, have characteristic patterns of 13C(alpha) and 13C(beta) conformational shifts, as expected on the basis of their phi and psi angles. This fact strongly supports the potential value of 13C(alpha) and 13C(beta) conformational shifts as a means to identify beta-hairpin motifs in peptides. Their usefulness was confirmed by analysing the patterns of 13C(alpha) and 13C(beta) conformational shifts in 13 short peptides, 10-15 residues long, that adopt beta-hairpin structures in aqueous solution. Furthermore, we have investigated their potential as a method to quantify beta-hairpin populations in peptides.

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Year:  2001        PMID: 11370779     DOI: 10.1023/a:1011224625129

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  43 in total

1.  The effect of motional averaging on the calculation of NMR-derived structural properties.

Authors:  X Daura; I Antes; W F van Gunsteren; W Thiel; A E Mark
Journal:  Proteins       Date:  1999-09-01

2.  Conformation of beta hairpins in protein structures: classification and diversity in homologous structures.

Authors:  B L Sibanda; J M Thornton
Journal:  Methods Enzymol       Date:  1991       Impact factor: 1.600

3.  Conformational investigation of designed short linear peptides able to fold into beta-hairpin structures in aqueous solution.

Authors:  E de Alba; M A Jiménez; M Rico; J L Nieto
Journal:  Fold Des       Date:  1996

4.  Protein backbone angle restraints from searching a database for chemical shift and sequence homology.

Authors:  G Cornilescu; F Delaglio; A Bax
Journal:  J Biomol NMR       Date:  1999-03       Impact factor: 2.835

5.  A short linear peptide derived from the N-terminal sequence of ubiquitin folds into a water-stable non-native beta-hairpin.

Authors:  M S Searle; D H Williams; L C Packman
Journal:  Nat Struct Biol       Date:  1995-11

6.  A two-dimensional nuclear Overhauser enhancement (2D NOE) experiment for the elucidation of complete proton-proton cross-relaxation networks in biological macromolecules.

Authors:  A Kumar; R R Ernst; K Wüthrich
Journal:  Biochem Biophys Res Commun       Date:  1980-07-16       Impact factor: 3.575

7.  Protein phi and psi dihedral restraints determined from multidimensional hypersurface correlations of backbone chemical shifts and their use in the determination of protein tertiary structures.

Authors:  R D Beger; P H Bolton
Journal:  J Biomol NMR       Date:  1997-09       Impact factor: 2.835

8.  1H, 13C and 15N chemical shift referencing in biomolecular NMR.

Authors:  D S Wishart; C G Bigam; J Yao; F Abildgaard; H J Dyson; E Oldfield; J L Markley; B D Sykes
Journal:  J Biomol NMR       Date:  1995-09       Impact factor: 2.835

9.  13C alpha-NMR assignments of melittin in methanol and chemical shift correlations with secondary structure.

Authors:  P Buckley; A S Edison; M D Kemple; F G Prendergast
Journal:  J Biomol NMR       Date:  1993-11       Impact factor: 2.835

Review 10.  Chemical shifts and three-dimensional protein structures.

Authors:  E Oldfield
Journal:  J Biomol NMR       Date:  1995-04       Impact factor: 2.835

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  20 in total

1.  Unblocked statistical-coil tetrapeptides in aqueous solution: quantum-chemical computation of the carbon-13 NMR chemical shifts.

Authors:  Jorge A Vila; Héctor A Baldoni; Daniel R Ripoll; Harold A Scheraga
Journal:  J Biomol NMR       Date:  2003-06       Impact factor: 2.835

2.  Turn stability in beta-hairpin peptides: Investigation of peptides containing 3:5 type I G1 bulge turns.

Authors:  Tamas Blandl; Andrea G Cochran; Nicholas J Skelton
Journal:  Protein Sci       Date:  2003-02       Impact factor: 6.725

3.  Predicting 15N chemical shifts in proteins using the preceding residue-specific individual shielding surfaces from phi, psi i-1, and chi 1 torsion angles.

Authors:  Yunjun Wang; Oleg Jardetzky
Journal:  J Biomol NMR       Date:  2004-04       Impact factor: 2.835

4.  Chemical shifts provide fold populations and register of beta hairpins and beta sheets.

Authors:  R Matthew Fesinmeyer; F Michael Hudson; Katherine A Olsen; George W N White; Anna Euser; Niels H Andersen
Journal:  J Biomol NMR       Date:  2005-12       Impact factor: 2.835

5.  13C structuring shifts for the analysis of model β-hairpins and β-sheets in proteins: diagnostic shifts appear only at the cross-strand H-bonded residues.

Authors:  Irene Shu; Michele Scian; James M Stewart; Brandon L Kier; Niels H Andersen
Journal:  J Biomol NMR       Date:  2013-07-14       Impact factor: 2.835

6.  Modeling the mechanism of CLN025 beta-hairpin formation.

Authors:  Keri A McKiernan; Brooke E Husic; Vijay S Pande
Journal:  J Chem Phys       Date:  2017-09-14       Impact factor: 3.488

7.  Effects of side-chain orientation on the 13C chemical shifts of antiparallel beta-sheet model peptides.

Authors:  Myriam E Villegas; Jorge A Vila; Harold A Scheraga
Journal:  J Biomol NMR       Date:  2006-12-19       Impact factor: 2.835

8.  Design and NMR conformational study of a beta-sheet peptide based on Betanova and WW domains.

Authors:  Ana M Fernández-Escamilla; Salvador Ventura; Luis Serrano; M Angeles Jiménez
Journal:  Protein Sci       Date:  2006-09-08       Impact factor: 6.725

9.  Micelle-Triggered β-Hairpin to α-Helix Transition in a 14-Residue Peptide from a Choline-Binding Repeat of the Pneumococcal Autolysin LytA.

Authors:  Héctor Zamora-Carreras; Beatriz Maestro; Erik Strandberg; Anne S Ulrich; Jesús M Sanz; M Ángeles Jiménez
Journal:  Chemistry       Date:  2015-04-27       Impact factor: 5.236

10.  Predicting the redox state and secondary structure of cysteine residues using multi-dimensional classification analysis of NMR chemical shifts.

Authors:  Ching-Cheng Wang; Wen-Chung Lai; Woei-Jer Chuang
Journal:  J Biomol NMR       Date:  2016-09-09       Impact factor: 2.835

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