Literature DB >> 11353859

The pKa of His-24 in the folding transition state of apomyoglobin.

M Jamin1, B Geierstanger, R L Baldwin.   

Abstract

In native apomyoglobin, His-24 cannot be protonated, although at pH 4 the native protein forms a molten globule folding intermediate in which the histidine residues are readily protonated. The inability to protonate His-24 in the native protein dramatically affects the unfolding/refolding kinetics, as demonstrated by simulations for a simple model. Kinetic data for wild type and for a mutant lacking His-24 are analyzed. The pK(a) values of histidine residues in native apomyoglobin are known from earlier studies, and the average histidine pK(a) in the molten globule is determined from the pH dependence of the equilibrium between the native and molten globule forms. Analysis of the pH-dependent unfolding/refolding kinetics reveals that the average pK(a) of the histidine residues, including His-24, is closely similar in the folding transition state to the value found in the molten globule intermediate. Consequently, protonation of His-24 is not a barrier to refolding of the molten globule to the native protein. Instead, the normal pK(a) of His-24 in the transition state, coupled with its inaccessibility in the native state, promotes fast unfolding at low pH. The analysis of the wild-type results is confirmed and extended by using the wild-type parameters to fit the unfolding kinetics of a mutant lacking His-24.

Entities:  

Mesh:

Substances:

Year:  2001        PMID: 11353859      PMCID: PMC33433          DOI: 10.1073/pnas.111157998

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  22 in total

1.  The unfolding enthalpy of the pH 4 molten globule of apomyoglobin measured by isothermal titration calorimetry.

Authors:  M Jamin; M Antalik; S N Loh; D W Bolen; R L Baldwin
Journal:  Protein Sci       Date:  2000-07       Impact factor: 6.725

Review 2.  Fast kinetics and mechanisms in protein folding.

Authors:  W A Eaton; V Muñoz; S J Hagen; G S Jas; L J Lapidus; E R Henry; J Hofrichter
Journal:  Annu Rev Biophys Biomol Struct       Date:  2000

3.  Studies on the structure of hemoglobin. I. Physicochemical properties of human globin.

Authors:  A R FANELLI; E ANTONINI; A CAPUTO
Journal:  Biochim Biophys Acta       Date:  1958-12

4.  Spectroscopic determination of tryptophan and tyrosine in proteins.

Authors:  H Edelhoch
Journal:  Biochemistry       Date:  1967-07       Impact factor: 3.162

Review 5.  Protein denaturation. C. Theoretical models for the mechanism of denaturation.

Authors:  C Tanford
Journal:  Adv Protein Chem       Date:  1970

6.  Structure of myoglobin refined at 2-0 A resolution. I. Crystallographic refinement of metmyoglobin from sperm whale.

Authors:  T Takano
Journal:  J Mol Biol       Date:  1977-03-05       Impact factor: 5.469

Review 7.  Stability of proteins: small globular proteins.

Authors:  P L Privalov
Journal:  Adv Protein Chem       Date:  1979

8.  Mechanism of acid-induced folding of proteins.

Authors:  Y Goto; N Takahashi; A L Fink
Journal:  Biochemistry       Date:  1990-04-10       Impact factor: 3.162

9.  Salt effects on ionization equilibria of histidines in myoglobin.

Authors:  Y H Kao; C A Fitch; S Bhattacharya; C J Sarkisian; J T Lecomte; B García-Moreno E
Journal:  Biophys J       Date:  2000-09       Impact factor: 4.033

10.  Protonation behavior of histidine 24 and histidine 119 in forming the pH 4 folding intermediate of apomyoglobin.

Authors:  B Geierstanger; M Jamin; B F Volkman; R L Baldwin
Journal:  Biochemistry       Date:  1998-03-24       Impact factor: 3.162

View more
  9 in total

1.  The effect of electrostatics on the marginal cooperativity of an ultrafast folding protein.

Authors:  Tanay M Desai; Michele Cerminara; Mourad Sadqi; Victor Muñoz
Journal:  J Biol Chem       Date:  2010-08-22       Impact factor: 5.157

2.  How strong are side chain interactions in the folding intermediate?

Authors:  Ekaterina N Samatova; Natalia S Katina; Vitaly A Balobanov; Bogdan S Melnik; Dmitry A Dolgikh; Valentina E Bychkova; Alexei V Finkelstein
Journal:  Protein Sci       Date:  2009-10       Impact factor: 6.725

3.  Measurement of protein unfolding/refolding kinetics and structural characterization of hidden intermediates by NMR relaxation dispersion.

Authors:  Derrick W Meinhold; Peter E Wright
Journal:  Proc Natl Acad Sci U S A       Date:  2011-05-11       Impact factor: 11.205

4.  Measurement of histidine pKa values and tautomer populations in invisible protein states.

Authors:  Alexandar L Hansen; Lewis E Kay
Journal:  Proc Natl Acad Sci U S A       Date:  2014-04-14       Impact factor: 11.205

5.  Energetic frustration of apomyoglobin folding: role of the B helix.

Authors:  Chiaki Nishimura; H Jane Dyson; Peter E Wright
Journal:  J Mol Biol       Date:  2010-01-04       Impact factor: 5.469

6.  PPD v1.0--an integrated, web-accessible database of experimentally determined protein pKa values.

Authors:  Christopher P Toseland; Helen McSparron; Matthew N Davies; Darren R Flower
Journal:  Nucleic Acids Res       Date:  2006-01-01       Impact factor: 16.971

Review 7.  Folding of apomyoglobin: Analysis of transient intermediate structure during refolding using quick hydrogen deuterium exchange and NMR.

Authors:  Chiaki Nishimura
Journal:  Proc Jpn Acad Ser B Phys Biol Sci       Date:  2017       Impact factor: 3.493

8.  PKAD: a database of experimentally measured pKa values of ionizable groups in proteins.

Authors:  Swagata Pahari; Lexuan Sun; Emil Alexov
Journal:  Database (Oxford)       Date:  2019-01-01       Impact factor: 3.451

9.  Switching Protein Conformational Substates by Protonation and Mutation.

Authors:  Abhishek Narayan; Athi N Naganathan
Journal:  J Phys Chem B       Date:  2018-08-10       Impact factor: 2.991

  9 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.