Literature DB >> 11331905

Predicting adaptive evolution.

R M Bush.   

Abstract

Phylogenetic trees reconstruct past evolution and can provide evidence of past evolutionary pressure on genes and on individual codons. In addition to tracing past evolutionary events, molecular phylogenetics might also be used to predict future evolution. Our ability to verify adaptive hypotheses using phylogenetics has broad implications for vaccine design, genomics and structural biology.

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Year:  2001        PMID： 11331905     DOI： 10.1038/35072023

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN： 1471-0056            Impact factor:   53.242


  20 in total

1.  A structural model of latent evolutionary potentials underlying neutral networks in proteins.

Authors:  Richard Wroe; Hue Sun Chan; Erich Bornberg-Bauer
Journal:  HFSP J       Date:  2007-05-21

2.  How to infer relative fitness from a sample of genomic sequences.

Authors:  Adel Dayarian; Boris I Shraiman
Journal:  Genetics       Date:  2014-04-26       Impact factor: 4.562

3.  Hemagglutinin sequence clusters and the antigenic evolution of influenza A virus.

Authors:  Joshua B Plotkin; Jonathan Dushoff; Simon A Levin
Journal:  Proc Natl Acad Sci U S A       Date:  2002-04-23       Impact factor: 11.205

4.  Fatty acid biosynthesis in Mycobacterium tuberculosis: lateral gene transfer, adaptive evolution, and gene duplication.

Authors:  Rhoda J Kinsella; David A Fitzpatrick; Christopher J Creevey; James O McInerney
Journal:  Proc Natl Acad Sci U S A       Date:  2003-08-13       Impact factor: 11.205

5.  Directional evolution of Chlamydia trachomatis towards niche-specific adaptation.

Authors:  Vítor Borges; Alexandra Nunes; Rita Ferreira; Maria J Borrego; João P Gomes
Journal:  J Bacteriol       Date:  2012-09-07       Impact factor: 3.490

6.  Prediction of the membrane-spanning beta-strands of the major outer membrane protein of Chlamydia.

Authors:  María José Rodríguez-Marañón; Robin M Bush; Ellena M Peterson; Tilman Schirmer; Luis M de la Maza
Journal:  Protein Sci       Date:  2002-07       Impact factor: 6.725

7.  Patterns of positive selection in the complete NBS-LRR gene family of Arabidopsis thaliana.

Authors:  Mariana Mondragón-Palomino; Blake C Meyers; Richard W Michelmore; Brandon S Gaut
Journal:  Genome Res       Date:  2002-09       Impact factor: 9.043

8.  Colon cancer associated genes exhibit signatures of positive selection at functionally significant positions.

Authors:  Claire C Morgan; Kabita Shakya; Andrew Webb; Thomas A Walsh; Mark Lynch; Christine E Loscher; Heather J Ruskin; Mary J O'Connell
Journal:  BMC Evol Biol       Date:  2012-07-12       Impact factor: 3.260

9.  A comparison of parallel pyrosequencing and sanger clone-based sequencing and its impact on the characterization of the genetic diversity of HIV-1.

Authors:  Binhua Liang; Ma Luo; Joel Scott-Herridge; Christina Semeniuk; Mark Mendoza; Rupert Capina; Brent Sheardown; Hezhao Ji; Joshua Kimani; Blake T Ball; Gary Van Domselaar; Morag Graham; Shane Tyler; Steven J M Jones; Francis A Plummer
Journal:  PLoS One       Date:  2011-10-21       Impact factor: 3.240

10.  Chlamydia trachomatis diversity viewed as a tissue-specific coevolutionary arms race.

Authors:  Alexandra Nunes; Paulo J Nogueira; Maria J Borrego; João P Gomes
Journal:  Genome Biol       Date:  2008-10-23       Impact factor: 13.583
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