Literature DB >> 11329253

Structure of the metal-water complex in Ras x GDP studied by high-field EPR spectroscopy and 31P NMR spectroscopy.

M Rohrer1, T F Prisner, O Brügmann, H Käss, M Spoerner, A Wittinghofer, H R Kalbitzer.   

Abstract

The small GTPase Ras plays a key role as a molecular switch in the intercellular signal transduction. On Mg(2+) --> Mn(2+) substituted samples, the first ligand sphere of the metal ion in the inactive, GDP-bound Ras has been studied by continuous wave EPR at 94 GHz (W-band). Via replacement of normal water with (17)O-enriched water, the (17)O--(55)Mn superhyperfine coupling was used to determine the number of water ligands bound to the metal ion. In contrast to EPR data on frozen solutions and X-ray data from single crystals where four direct ligands to the metal ion are found, the wild-type protein has only three water ligands bound in solution at room temperature. The same number of water ligands is found for the mutant Ras(T35S). However, for the alanine mutant in position 35 Ras(T35A) as well as for the oncogenic mutant Ras(G12V), four water ligands can be observed in liquid solution. The EPR studies were supplemented by (31)P NMR studies on the Mg(2+) x GDP complexes of the wild-type protein and the three mutants. Ras(T35A) exists in two conformational states (1 and 2) with an equilibrium constant K(1)(1,2) of approximately 0.49 and rate constants k(1--1) which are much smaller than 40 s(-1) at 298 K. For wild-type Ras and Ras(T35S), the two states can also be observed with equilibrium constants K(1)(1,2) of approximately 0.31 and 0.21, respectively. In Ras(G12V), only one conformational state could be detected.

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Year:  2001        PMID: 11329253     DOI: 10.1021/bi002164y

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  17 in total

1.  High field/high frequency saturation transfer electron paramagnetic resonance spectroscopy: increased sensitivity to very slow rotational motions.

Authors:  Eric J Hustedt; Albert H Beth
Journal:  Biophys J       Date:  2004-06       Impact factor: 4.033

2.  Catalysis of GTP hydrolysis by small GTPases at atomic detail by integration of X-ray crystallography, experimental, and theoretical IR spectroscopy.

Authors:  Till Rudack; Sarah Jenrich; Sven Brucker; Ingrid R Vetter; Klaus Gerwert; Carsten Kötting
Journal:  J Biol Chem       Date:  2015-08-13       Impact factor: 5.157

3.  High pressure 31P NMR spectroscopy on guanine nucleotides.

Authors:  Michael Spoerner; Matthias Karl; Pedro Lopes; Marcus Hoering; Karoline Loeffel; Andrea Nuehs; Joseph Adelsberger; Werner Kremer; Hans Robert Kalbitzer
Journal:  J Biomol NMR       Date:  2016-12-23       Impact factor: 2.835

4.  Catalytic mechanism of a mammalian Rab·RabGAP complex in atomic detail.

Authors:  Konstantin Gavriljuk; Emerich-Mihai Gazdag; Aymelt Itzen; Carsten Kötting; Roger S Goody; Klaus Gerwert
Journal:  Proc Natl Acad Sci U S A       Date:  2012-12-12       Impact factor: 11.205

Review 5.  Lessons from computer simulations of Ras proteins in solution and in membrane.

Authors:  Priyanka Prakash; Alemayehu A Gorfe
Journal:  Biochim Biophys Acta       Date:  2013-07-30

6.  Improved binding of raf to Ras.GDP is correlated with biological activity.

Authors:  Christina Kiel; Daniel Filchtinski; Michael Spoerner; Gideon Schreiber; Hans Robert Kalbitzer; Christian Herrmann
Journal:  J Biol Chem       Date:  2009-09-23       Impact factor: 5.157

7.  Overview of simulation studies on the enzymatic activity and conformational dynamics of the GTPase Ras.

Authors:  Priyanka Prakash; Alemayehu A Gorfe
Journal:  Mol Simul       Date:  2014-03-19       Impact factor: 2.178

8.  Genetically encoded photoswitching of actin assembly through the Cdc42-WASP-Arp2/3 complex pathway.

Authors:  Daisy W Leung; Chinatsu Otomo; Joanne Chory; Michael K Rosen
Journal:  Proc Natl Acad Sci U S A       Date:  2008-08-26       Impact factor: 11.205

9.  Ras and GTPase-activating protein (GAP) drive GTP into a precatalytic state as revealed by combining FTIR and biomolecular simulations.

Authors:  Till Rudack; Fei Xia; Jürgen Schlitter; Carsten Kötting; Klaus Gerwert
Journal:  Proc Natl Acad Sci U S A       Date:  2012-09-04       Impact factor: 11.205

10.  The role of magnesium for geometry and charge in GTP hydrolysis, revealed by quantum mechanics/molecular mechanics simulations.

Authors:  Till Rudack; Fei Xia; Jürgen Schlitter; Carsten Kötting; Klaus Gerwert
Journal:  Biophys J       Date:  2012-07-17       Impact factor: 4.033

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