Literature DB >> 11328188

Polymer reptation and nucleosome repositioning.

H Schiessel1, J Widom, R F Bruinsma, W M Gelbart.   

Abstract

We consider how beads can diffuse along a chain that wraps them, without becoming displaced from the chain; our proposed mechanism is analogous to the reptation of "stored length" in more familiar situations of polymer dynamics. The problem arises in the case of globular aggregates of proteins (histones) that are wound by DNA in the chromosomes of plants and animals; these beads (nucleosomes) are multiply wrapped and yet are able to reposition themselves over long distances, while remaining bound by the DNA chain.

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Year:  2001        PMID: 11328188     DOI: 10.1103/PhysRevLett.86.4414

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  39 in total

1.  A critical epitope for substrate recognition by the nucleosome remodeling ATPase ISWI.

Authors:  Cedric R Clapier; Karl P Nightingale; Peter B Becker
Journal:  Nucleic Acids Res       Date:  2002-02-01       Impact factor: 16.971

2.  Nucleosome repositioning via loop formation.

Authors:  I M Kulić; H Schiessel
Journal:  Biophys J       Date:  2003-05       Impact factor: 4.033

Review 3.  Nucleosome sliding: facts and fiction.

Authors:  Peter B Becker
Journal:  EMBO J       Date:  2002-09-16       Impact factor: 11.598

4.  A statistical thermodynamic model applied to experimental AFM population and location data is able to quantify DNA-histone binding strength and internucleosomal interaction differences between acetylated and unacetylated nucleosomal arrays.

Authors:  F J Solis; R Bash; J Yodh; S M Lindsay; D Lohr
Journal:  Biophys J       Date:  2004-09-03       Impact factor: 4.033

5.  Computational study of remodeling in a nucleosomal array.

Authors:  Raoul D Schram; Henrike Klinker; Peter B Becker; Helmut Schiessel
Journal:  Eur Phys J E Soft Matter       Date:  2015-08-10       Impact factor: 1.890

6.  Chromatin remodeling by DNA bending, not twisting.

Authors:  Yahli Lorch; Barbara Davis; Roger D Kornberg
Journal:  Proc Natl Acad Sci U S A       Date:  2005-01-26       Impact factor: 11.205

7.  The nucleosome: a transparent, slippery, sticky and yet stable DNA-protein complex.

Authors:  H Schiessel
Journal:  Eur Phys J E Soft Matter       Date:  2006-02-02       Impact factor: 1.890

8.  Spontaneous access of proteins to buried nucleosomal DNA target sites occurs via a mechanism that is distinct from nucleosome translocation.

Authors:  J D Anderson; A Thåström; J Widom
Journal:  Mol Cell Biol       Date:  2002-10       Impact factor: 4.272

9.  Domain architecture of the catalytic subunit in the ISW2-nucleosome complex.

Authors:  Weiwei Dang; Blaine Bartholomew
Journal:  Mol Cell Biol       Date:  2007-10-01       Impact factor: 4.272

10.  Formation and positioning of nucleosomes: effect of sequence-dependent long-range correlated structural disorder.

Authors:  C Vaillant; B Audit; C Thermes; A Arnéodo
Journal:  Eur Phys J E Soft Matter       Date:  2006-02-14       Impact factor: 1.890

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