Literature DB >> 11327835

Structural and kinetic analysis of the chemical rescue of the proton transfer function of carbonic anhydrase II.

D Duda1, C Tu, M Qian, P Laipis, M Agbandje-McKenna, D N Silverman, R McKenna.   

Abstract

Histidine 64 in human carbonic anhydrase II (HCA II) functions in the catalytic pathway of CO(2) hydration as a shuttle to transfer protons between the zinc-bound water and bulk water. Catalysis of the exchange of (18)O between CO(2) and water, measured by mass spectrometry, is dependent on this proton transfer and was decreased more than 10-fold for H64A HCA II compared with wild-type HCA II. The loss of catalytic activity of H64A HCA II could be rescued by 4-methylimidazole (4-MI), an exogenous proton donor, in a saturable process with a maximum activity of 40% of wild-type HCA II. The crystal structure of the rescued complex at 1.6 A resolution shows 4-MI bound in the active-site cavity of H64A HCA II, through pi stacking interactions with Trp 5 and H-bonding interactions with water molecules. In this location, 4-MI is about 12 A from the zinc and approximates the observed "out" position of His 64 in the structure of the wild-type enzyme. 4-MI appears to compensate for the absence of His 64 and rescues the catalytic activity of the H64A HCA II mutant. This result strongly suggests that the out conformation of His 64 is effective in the transfer of protons between the zinc-bound solvent molecule and solution.

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Year:  2001        PMID: 11327835     DOI: 10.1021/bi002295z

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  28 in total

1.  "Proton holes" in long-range proton transfer reactions in solution and enzymes: A theoretical analysis.

Authors:  Demian Riccardi; Peter König; Xavier Prat-Resina; Haibo Yu; Marcus Elstner; Thomas Frauenheim; Qiang Cui
Journal:  J Am Chem Soc       Date:  2006-12-20       Impact factor: 15.419

2.  Intramolecular proton shuttle supports not only catalytic but also noncatalytic function of carbonic anhydrase II.

Authors:  Holger M Becker; Michael Klier; Christina Schüler; Robert McKenna; Joachim W Deitmer
Journal:  Proc Natl Acad Sci U S A       Date:  2011-01-31       Impact factor: 11.205

3.  Synchrotron Radiation Provides a Plausible Explanation for the Generation of a Free Radical Adduct of Thioxolone in Mutant Carbonic Anhydrase II.

Authors:  Katherine H Sippel; Caroli Genis; Lakshmanan Govindasamy; Mavis Agbandje-McKenna; James J Kiddle; Brian C Tripp; Robert McKenna
Journal:  J Phys Chem Lett       Date:  2010-10-07       Impact factor: 6.475

Review 4.  Proton solvation and transport in aqueous and biomolecular systems: insights from computer simulations.

Authors:  Jessica M J Swanson; C Mark Maupin; Hanning Chen; Matt K Petersen; Jiancong Xu; Yujie Wu; Gregory A Voth
Journal:  J Phys Chem B       Date:  2007-04-13       Impact factor: 2.991

Review 5.  Carbonic anhydrase as a model for biophysical and physical-organic studies of proteins and protein-ligand binding.

Authors:  Vijay M Krishnamurthy; George K Kaufman; Adam R Urbach; Irina Gitlin; Katherine L Gudiksen; Douglas B Weibel; George M Whitesides
Journal:  Chem Rev       Date:  2008-03       Impact factor: 60.622

6.  Structural and kinetic study of the extended active site for proton transfer in human carbonic anhydrase II.

Authors:  John F Domsic; Wilton Williams; Suzanne Z Fisher; Chingkuang Tu; Mavis Agbandje-McKenna; David N Silverman; Robert McKenna
Journal:  Biochemistry       Date:  2010-08-03       Impact factor: 3.162

7.  Location of binding sites in small molecule rescue of human carbonic anhydrase II.

Authors:  Deepa Bhatt; S Zoë Fisher; Chingkuang Tu; Robert McKenna; David N Silverman
Journal:  Biophys J       Date:  2006-10-27       Impact factor: 4.033

8.  Origins of enhanced proton transport in the Y7F mutant of human carbonic anhydrase II.

Authors:  C Mark Maupin; Marissa G Saunders; Ian F Thorpe; Robert McKenna; David N Silverman; Gregory A Voth
Journal:  J Am Chem Soc       Date:  2008-07-31       Impact factor: 15.419

Review 9.  Proton transport in carbonic anhydrase: Insights from molecular simulation.

Authors:  C Mark Maupin; Gregory A Voth
Journal:  Biochim Biophys Acta       Date:  2009-09-16

10.  Effect of active-site mutation at Asn67 on the proton transfer mechanism of human carbonic anhydrase II.

Authors:  C Mark Maupin; Jiayin Zheng; Chingkuang Tu; Robert McKenna; David N Silverman; Gregory A Voth
Journal:  Biochemistry       Date:  2009-08-25       Impact factor: 3.162

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