Literature DB >> 11326068

Fast protein dynamics probed with infrared vibrational echo experiments.

M D Fayer1.   

Abstract

IR vibrational echo experiments are used to study dynamics in myoglobin (Mb) by investigating the dephasing of the CO-stretching mode of CO bound at the active site of the protein (Mb-CO). The temperature dependence and the viscosity dependence of Mb-CO pure dephasing have been measured in several solvents. In low-temperature, glassy solvents, the pure dephasing has a power law temperature dependence, T(1.3), that reflects glasslike protein dynamics. In liquids, the temperature dependence is much steeper and arises from a combination of pure temperature dependence and the influence of decreasing solvent viscosity with increasing temperature. As the solvent viscosity decreases, the ability of the protein's surface to undergo topological fluctuations increases, which in turn increases the internal protein-structural fluctuations. The protein-structural motions are coupled to the CO bound at the active site by electric field fluctuations that accompany movements of polar residues. The dynamic electric field-coupling mechanism is tested by observing differences in the temperature dependence of the pure dephasing of Mb-CO mutations.

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Year:  2001        PMID: 11326068     DOI: 10.1146/annurev.physchem.52.1.315

Source DB:  PubMed          Journal:  Annu Rev Phys Chem        ISSN: 0066-426X            Impact factor:   12.703


  24 in total

1.  Flexibility and molecular recognition in the immune system.

Authors:  Ralph Jimenez; Georgina Salazar; Kim K Baldridge; Floyd E Romesberg
Journal:  Proc Natl Acad Sci U S A       Date:  2002-12-23       Impact factor: 11.205

2.  Are the conformational dynamics and the ligand binding properties of myoglobin affected by exposure to microwave radiation?

Authors:  Ettore Bismuto; Fabrizio Mancinelli; Guglielmo d'Ambrosio; Rita Massa
Journal:  Eur Biophys J       Date:  2003-06-13       Impact factor: 1.733

3.  Myoglobin-CO substate structures and dynamics: multidimensional vibrational echoes and molecular dynamics simulations.

Authors:  Kusai A Merchant; W G Noid; Ryo Akiyama; Ilya J Finkelstein; Alexei Goun; Brian L McClain; Roger F Loring; M D Fayer
Journal:  J Am Chem Soc       Date:  2003-11-12       Impact factor: 15.419

4.  Fifth-order contributions to ultrafast spectrally resolved vibrational echoes: heme-CO proteins.

Authors:  Ilya J Finkelstein; Brian L McClain; M D Fayer
Journal:  J Chem Phys       Date:  2004-07-08       Impact factor: 3.488

5.  Dynamics of hemoglobin in human erythrocytes and in solution: influence of viscosity studied by ultrafast vibrational echo experiments.

Authors:  Brian L McClain; Ilya J Finkelstein; M D Fayer
Journal:  J Am Chem Soc       Date:  2004-12-08       Impact factor: 15.419

6.  Vibrational energy relaxation in proteins.

Authors:  Hiroshi Fujisaki; John E Straub
Journal:  Proc Natl Acad Sci U S A       Date:  2005-03-14       Impact factor: 11.205

7.  Probing electric fields in protein cavities by using the vibrational stark effect of carbon monoxide.

Authors:  Hartwig Lehle; Jan M Kriegl; Karin Nienhaus; Pengchi Deng; Stephanus Fengler; G Ulrich Nienhaus
Journal:  Biophys J       Date:  2004-12-13       Impact factor: 4.033

8.  A structure-based simulation approach for electron paramagnetic resonance spectra using molecular and stochastic dynamics simulations.

Authors:  Christian Beier; Heinz-Jürgen Steinhoff
Journal:  Biophys J       Date:  2006-07-14       Impact factor: 4.033

9.  Infrared absorption study of the heme pocket dynamics of carbonmonoxyheme proteins.

Authors:  Andras D Kaposi; Jane M Vanderkooi; Solomon S Stavrov
Journal:  Biophys J       Date:  2006-09-15       Impact factor: 4.033

10.  Characterizing the dynamics of functionally relevant complexes of formate dehydrogenase.

Authors:  Jigar N Bandaria; Samrat Dutta; Michael W Nydegger; William Rock; Amnon Kohen; Christopher M Cheatum
Journal:  Proc Natl Acad Sci U S A       Date:  2010-09-27       Impact factor: 11.205

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