Literature DB >> 11309680

Identification of a new candidate locus for uric acid nephrolithiasis.

M N Ombra1, P Forabosco, S Casula, A Angius, G Maestrale, E Petretto, G Casu, G Colussi, E Usai, P Melis, M Pirastu.   

Abstract

Renal stone formation is a common multifactorial disorder, of unknown etiology, with an established genetic contribution. Lifetime risk for nephrolithiasis is approximately 10% in Western populations, and uric acid stones account for 5%-10% of all stones, depending on climatic, dietary, and ethnic differences. We studied a small, isolated founder population in Sardinia, characterized by an increased prevalence of uric acid stones, and performed a genomewide search in a deep-rooted pedigree comprising many members who formed uric acid renal stones. The pedigree was created by tracing common ancestors of affected individuals through a genealogical database based on archival records kept by the parish church since 1640. This genealogical information was used as the basis for the study strategy, involving screening for alleles shared among affected individuals, originating from common ancestors, and utilization of large pedigrees to obtain greater power for linkage detection. We performed multistep linkage and allele-sharing analyses. In the initial stage, 382 markers were typed in 14 closely related affected subjects; interesting regions were subsequently investigated in the whole sample. We identified two chromosomal regions that may harbor loci with susceptibility genes for uric acid stones. The strongest evidence was observed on 10q21-q22, where a LOD score of 3.07 was obtained for D10S1652 under an affected-only dominant model, and a LOD score of 3.90 was obtained using a dominant pseudomarker assignment. The localization was supported also by multipoint allele-sharing statistics and by haplotype analysis of familial cases and of unrelated affected subjects collected from the isolate. In the second region on 20q13.1-13.3, multipoint nonparametric scores yielded suggestive evidence in a approximately 20-cM region, and further analysis is needed to confirm and fine-map this putative locus. Replication studies are required to investigate the involvement of these regions in the genetic contribution to uric acid stone formation.

Entities:  

Mesh:

Substances:

Year:  2001        PMID: 11309680      PMCID: PMC1226093          DOI: 10.1086/320105

Source DB:  PubMed          Journal:  Am J Hum Genet        ISSN: 0002-9297            Impact factor:   11.025


  45 in total

Review 1.  Nephrolithiasis.

Authors:  S J Scheinman
Journal:  Semin Nephrol       Date:  1999-07       Impact factor: 5.299

2.  A simple salting out procedure for extracting DNA from human nucleated cells.

Authors:  S A Miller; D D Dykes; H F Polesky
Journal:  Nucleic Acids Res       Date:  1988-02-11       Impact factor: 16.971

3.  A comprehensive genetic map of the human genome based on 5,264 microsatellites.

Authors:  C Dib; S Fauré; C Fizames; D Samson; N Drouot; A Vignal; P Millasseau; S Marc; J Hazan; E Seboun; M Lathrop; G Gyapay; J Morissette; J Weissenbach
Journal:  Nature       Date:  1996-03-14       Impact factor: 49.962

4.  Faster sequential genetic linkage computations.

Authors:  R W Cottingham; R M Idury; A A Schäffer
Journal:  Am J Hum Genet       Date:  1993-07       Impact factor: 11.025

5.  Genome screening by searching for shared segments: mapping a gene for benign recurrent intrahepatic cholestasis.

Authors:  R H Houwen; S Baharloo; K Blankenship; P Raeymaekers; J Juyn; L A Sandkuijl; N B Freimer
Journal:  Nat Genet       Date:  1994-12       Impact factor: 38.330

6.  Avoiding recomputation in linkage analysis.

Authors:  A A Schäffer; S K Gupta; K Shriram; R W Cottingham
Journal:  Hum Hered       Date:  1994 Jul-Aug       Impact factor: 0.444

7.  Localization of a gene causing cystinuria to chromosome 2p.

Authors:  E Pras; N Arber; I Aksentijevich; G Katz; J M Schapiro; L Prosen; L Gruberg; D Harel; U Liberman; J Weissenbach
Journal:  Nat Genet       Date:  1994-04       Impact factor: 38.330

8.  Ambulatory evaluation of nephrolithiasis. Classification, clinical presentation and diagnostic criteria.

Authors:  C Y Pak; F Britton; R Peterson; D Ward; C Northcutt; N A Breslau; J McGuire; K Sakhaee; S Bush; M Nicar; D A Norman; P Peters
Journal:  Am J Med       Date:  1980-07       Impact factor: 4.965

9.  Random search for shared chromosomal regions in four affected individuals: the assignment of a new hereditary ataxia locus.

Authors:  K Nikali; A Suomalainen; J Terwilliger; T Koskinen; J Weissenbach; L Peltonen
Journal:  Am J Hum Genet       Date:  1995-05       Impact factor: 11.025

Review 10.  Uric acid nephrolithiasis.

Authors:  A Halabe; O Sperling
Journal:  Miner Electrolyte Metab       Date:  1994
View more
  6 in total

1.  Familial steroid-sensitive nephrotic syndrome in Southern Israel: clinical and genetic observations.

Authors:  Daniel Landau; Tal Oved; Dan Geiger; Luba Abizov; Hanna Shalev; Ruti Parvari
Journal:  Pediatr Nephrol       Date:  2007-01-12       Impact factor: 3.714

2.  Variants in ZNF365 isoform D are associated with Crohn's disease.

Authors:  Talin Haritunians; Michelle R Jones; Dermot P B McGovern; David Q Shih; Robert J Barrett; Carrie Derkowski; Marla C Dubinsky; Debra Dutridge; Phillip R Fleshner; Andrew Ippoliti; Lily King; Esther Leshinsky-Silver; Arie Levine; Gil Y Melmed; Emebet Mengesha; Eric A Vasilauskas; Shabnam Ziaee; Jerome I Rotter; Stephan R Targan; Kent D Taylor
Journal:  Gut       Date:  2011-01-21       Impact factor: 23.059

Review 3.  Clinical review. Kidney stones 2012: pathogenesis, diagnosis, and management.

Authors:  Khashayar Sakhaee; Naim M Maalouf; Bridget Sinnott
Journal:  J Clin Endocrinol Metab       Date:  2012-03-30       Impact factor: 5.958

4.  A new essential hypertension susceptibility locus on chromosome 2p24-p25, detected by genomewide search.

Authors:  Andrea Angius; Enrico Petretto; Giovanni Battista Maestrale; Paola Forabosco; Giuseppina Casu; Daniela Piras; Manuela Fanciulli; Mario Falchi; Paola Maria Melis; Mario Palermo; Mario Pirastu
Journal:  Am J Hum Genet       Date:  2002-09-12       Impact factor: 11.025

5.  Identification of a novel gene and a common variant associated with uric acid nephrolithiasis in a Sardinian genetic isolate.

Authors:  Fernando Gianfrancesco; Teresa Esposito; Maria Neve Ombra; Paola Forabosco; Giuseppe Maninchedda; Mauro Fattorini; Stefania Casula; Simona Vaccargiu; Giuseppina Casu; Francesco Cardia; Ivo Deiana; Paola Melis; Mario Falchi; Mario Pirastu
Journal:  Am J Hum Genet       Date:  2003-05-09       Impact factor: 11.025

6.  Application of a new method for GWAS in a related case/control sample with known pedigree structure: identification of new loci for nephrolithiasis.

Authors:  Silvia Tore; Stefania Casula; Giuseppina Casu; Maria Pina Concas; Paola Pistidda; Ivana Persico; Alessandro Sassu; Giovanni Battista Maestrale; Caterina Mele; Maria Rosa Caruso; Bibiana Bonerba; Paolo Usai; Ivo Deiana; Timothy Thornton; Mario Pirastu; Paola Forabosco
Journal:  PLoS Genet       Date:  2011-01-20       Impact factor: 5.917

  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.