Literature DB >> 11301315

PhyloBLAST: facilitating phylogenetic analysis of BLAST results.

F S Brinkman1, I Wan, R E Hancock, A M Rose, S J Jones.   

Abstract

PhyloBLAST is an internet-accessed application based on CGI/Perl programming that compares a users protein sequence to a SwissProt/TREMBL database using BLAST2 and then allows phylogenetic analyses to be performed on selected sequences from the BLAST output. Flexible features such as ability to input your own multiple sequence alignment and use PHYLIP program options provide additional web-based phylogenetic analysis functionality beyond the analysis of a BLAST result.

Entities:  

Mesh:

Substances:

Year:  2001        PMID: 11301315     DOI: 10.1093/bioinformatics/17.4.385

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  9 in total

1.  New taxa in Alphaproteobacteria: Brevundimonas olei sp. nov., an esterase-producing bacterium.

Authors:  Myungjin Lee; Sathiyaraj Srinivasan; Myung Kyum Kim
Journal:  J Microbiol       Date:  2010-11-03       Impact factor: 3.422

2.  Leucobacter kyeonggiensis sp. nov., a new species isolated from dye waste water.

Authors:  Hyun-Jung Kim; Sang-Seob Lee
Journal:  J Microbiol       Date:  2011-12-28       Impact factor: 3.422

3.  Stenotrophomonas panacihumi sp. nov., isolated from soil of a ginseng field.

Authors:  Hoonbok Yi; Sathiyaraj Srinivasan; Myung Kyum Kim
Journal:  J Microbiol       Date:  2010-03-11       Impact factor: 3.422

4.  BLAST-EXPLORER helps you building datasets for phylogenetic analysis.

Authors:  Alexis Dereeper; Stephane Audic; Jean-Michel Claverie; Guillaume Blanc
Journal:  BMC Evol Biol       Date:  2010-01-12       Impact factor: 3.260

5.  POWER: PhylOgenetic WEb Repeater--an integrated and user-optimized framework for biomolecular phylogenetic analysis.

Authors:  Chung-Yen Lin; Fan-Kai Lin; Chieh Hua Lin; Li-Wei Lai; Hsiu-Jun Hsu; Shu-Hwa Chen; Chao A Hsiung
Journal:  Nucleic Acids Res       Date:  2005-07-01       Impact factor: 16.971

6.  Phylogeny.fr: robust phylogenetic analysis for the non-specialist.

Authors:  A Dereeper; V Guignon; G Blanc; S Audic; S Buffet; F Chevenet; J-F Dufayard; S Guindon; V Lefort; M Lescot; J-M Claverie; O Gascuel
Journal:  Nucleic Acids Res       Date:  2008-04-19       Impact factor: 16.971

7.  BuscoPhylo: a webserver for Busco-based phylogenomic analysis for non-specialists.

Authors:  Alae-Eddine Sahbou; Driss Iraqi; Rachid Mentag; Slimane Khayi
Journal:  Sci Rep       Date:  2022-10-17       Impact factor: 4.996

8.  aLeaves facilitates on-demand exploration of metazoan gene family trees on MAFFT sequence alignment server with enhanced interactivity.

Authors:  Shigehiro Kuraku; Christian M Zmasek; Osamu Nishimura; Kazutaka Katoh
Journal:  Nucleic Acids Res       Date:  2013-05-15       Impact factor: 16.971

9.  TARGeT: a web-based pipeline for retrieving and characterizing gene and transposable element families from genomic sequences.

Authors:  Yujun Han; James M Burnette; Susan R Wessler
Journal:  Nucleic Acids Res       Date:  2009-05-08       Impact factor: 16.971

  9 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.