Literature DB >> 11301130

The human proteomics initiative (HPI).

C O'Donovan1, R Apweiler, A Bairoch.   

Abstract

The availability of the human genome sequence has enabled the exploration and exploitation of the human genome and proteome to begin. Research has now focussed on the annotation of the genome and in particular of the proteome. With expert annotation extracted from the literature by biologists as the foundation, it has been possible to expand into the areas of data mining and automatic annotation. With further development and integration of pattern recognition methods and the application of alignments clustering, proteome analysis can now be provided in a meaningful way. These various approaches have been integrated to attach, extract and combine as much relevant information as possible to the proteome. This resource should be valuable to users from both research and industry.

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Year:  2001        PMID: 11301130     DOI: 10.1016/s0167-7799(01)01598-0

Source DB:  PubMed          Journal:  Trends Biotechnol        ISSN: 0167-7799            Impact factor:   19.536


  17 in total

1.  Classification of G-protein coupled receptors by alignment-independent extraction of principal chemical properties of primary amino acid sequences.

Authors:  Maris Lapinsh; Alexandrs Gutcaits; Peteris Prusis; Claes Post; Torbjörn Lundstedt; Jarl E S Wikberg
Journal:  Protein Sci       Date:  2002-04       Impact factor: 6.725

2.  The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003.

Authors:  Brigitte Boeckmann; Amos Bairoch; Rolf Apweiler; Marie-Claude Blatter; Anne Estreicher; Elisabeth Gasteiger; Maria J Martin; Karine Michoud; Claire O'Donovan; Isabelle Phan; Sandrine Pilbout; Michel Schneider
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

Review 3.  Proteomic technologies in the study of kinases: novel tools for the investigation of PKC in the heart.

Authors:  G Agnetti; L A Kane; C Guarnieri; C M Caldarera; J E Van Eyk
Journal:  Pharmacol Res       Date:  2007-05-03       Impact factor: 7.658

4.  CanProVar: a human cancer proteome variation database.

Authors:  Jing Li; Dexter T Duncan; Bing Zhang
Journal:  Hum Mutat       Date:  2010-03       Impact factor: 4.878

Review 5.  Application of Proteomics Technologies in Oil Palm Research.

Authors:  Benjamin Yii Chung Lau; Abrizah Othman; Umi Salamah Ramli
Journal:  Protein J       Date:  2018-12       Impact factor: 2.371

Review 6.  Repair of pre-mRNA splicing: prospects for a therapy for spinal muscular atrophy.

Authors:  Rachel Nlend Nlend; Kathrin Meyer; Daniel Schümperli
Journal:  RNA Biol       Date:  2010-07-01       Impact factor: 4.652

7.  CanProVar 2.0: An Updated Database of Human Cancer Proteome Variation.

Authors:  Menghuan Zhang; Bo Wang; Jia Xu; Xiaojing Wang; Lu Xie; Bing Zhang; Yixue Li; Jing Li
Journal:  J Proteome Res       Date:  2016-12-15       Impact factor: 4.466

8.  Precise and parallel characterization of coding polymorphisms, alternative splicing, and modifications in human proteins by mass spectrometry.

Authors:  Michael J Roth; Andrew J Forbes; Michael T Boyne; Yong-Bin Kim; Dana E Robinson; Neil L Kelleher
Journal:  Mol Cell Proteomics       Date:  2005-04-28       Impact factor: 5.911

9.  A bioinformatics workflow for variant peptide detection in shotgun proteomics.

Authors:  Jing Li; Zengliu Su; Ze-Qiang Ma; Robbert J C Slebos; Patrick Halvey; David L Tabb; Daniel C Liebler; William Pao; Bing Zhang
Journal:  Mol Cell Proteomics       Date:  2011-03-09       Impact factor: 5.911

10.  Towards the systematic discovery of signal transduction networks using phosphorylation dynamics data.

Authors:  Haruna Imamura; Nozomu Yachie; Rintaro Saito; Yasushi Ishihama; Masaru Tomita
Journal:  BMC Bioinformatics       Date:  2010-05-07       Impact factor: 3.169

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