Literature DB >> 30367348

Application of Proteomics Technologies in Oil Palm Research.

Benjamin Yii Chung Lau1, Abrizah Othman2, Umi Salamah Ramli2.   

Abstract

Proteomics technologies were first applied in the oil palm research back in 2008. Since proteins are the gene products that are directly correspond to phenotypic traits, proteomic tools hold a strong advantage above other molecular tools to comprehend the biological and molecular mechanisms in the oil palm system. These emerging technologies have been used as non-overlapping tools to link genome-wide transcriptomics and metabolomics-based studies to enhance the oil palm yield and quality through sustainable plant breeding. Many efforts have also been made using the proteomics technologies to address the oil palm's Ganoderma disease; the cause and management. At present, the high-throughput screening technologies are being applied to identify potential biomarkers involved in metabolism and cellular development through determination of protein expression changes that correlate with oil production and disease. This review highlights key elements in proteomics pipeline, challenges and some examples of their implementations in plant studies in the context of oil palm in particular. We foresee that the proteomics technologies will play more significant role to address diverse issues related to the oil palm in the effort to improve the oil crop.

Entities:  

Keywords:  Crop improvement; Fatty acids; Ganoderma; Oil palm; Quantitative proteomics

Mesh:

Substances:

Year:  2018        PMID: 30367348     DOI: 10.1007/s10930-018-9802-x

Source DB:  PubMed          Journal:  Protein J        ISSN: 1572-3887            Impact factor:   2.371


  235 in total

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Journal:  Brief Bioinform       Date:  2002-09       Impact factor: 11.622

Review 2.  Analysis of posttranslational modifications of proteins by tandem mass spectrometry.

Authors:  Martin R Larsen; Morten B Trelle; Tine E Thingholm; Ole N Jensen
Journal:  Biotechniques       Date:  2006-06       Impact factor: 1.993

Review 3.  Analytical strategies for phosphoproteomics.

Authors:  Tine E Thingholm; Ole N Jensen; Martin R Larsen
Journal:  Proteomics       Date:  2009-03       Impact factor: 3.984

Review 4.  A high-resolution two dimensional Gel- and Pro-Q DPS-based proteomics workflow for phosphoprotein identification and quantitative profiling.

Authors:  Ganesh K Agrawal; Jay J Thelen
Journal:  Methods Mol Biol       Date:  2009

5.  Quantitative proteomic analysis of bean plants infected by a virulent and avirulent obligate rust fungus.

Authors:  Joohyun Lee; Jian Feng; Kimberly B Campbell; Brian E Scheffler; Wesley M Garrett; Sandra Thibivilliers; Gary Stacey; Daniel Q Naiman; Mark L Tucker; M A Pastor-Corrales; Bret Cooper
Journal:  Mol Cell Proteomics       Date:  2008-08-28       Impact factor: 5.911

6.  Distinguishing homologous from analogous proteins.

Authors:  W M Fitch
Journal:  Syst Zool       Date:  1970-06

7.  Reactome: a database of reactions, pathways and biological processes.

Authors:  David Croft; Gavin O'Kelly; Guanming Wu; Robin Haw; Marc Gillespie; Lisa Matthews; Michael Caudy; Phani Garapati; Gopal Gopinath; Bijay Jassal; Steven Jupe; Irina Kalatskaya; Shahana Mahajan; Bruce May; Nelson Ndegwa; Esther Schmidt; Veronica Shamovsky; Christina Yung; Ewan Birney; Henning Hermjakob; Peter D'Eustachio; Lincoln Stein
Journal:  Nucleic Acids Res       Date:  2010-11-09       Impact factor: 16.971

8.  Comparative 2-DE proteomic analysis of date palm (Phoenix dactylifera L.) somatic and zygotic embryos.

Authors:  Besma Sghaier-Hammami; Noureddine Drira; Jesús V Jorrín-Novo
Journal:  J Proteomics       Date:  2009-07-18       Impact factor: 4.044

9.  Optimization of Protein Extraction and Two-Dimensional Electrophoresis Protocols for Oil Palm Leaf.

Authors:  Leona Daniela Jeffery Daim; Tony Eng Keong Ooi; Hirzun Mohd Yusof; Nazia Abdul Majid; Saiful Anuar Bin Karsani
Journal:  Protein J       Date:  2015-08       Impact factor: 2.371

10.  KinasePhos 2.0: a web server for identifying protein kinase-specific phosphorylation sites based on sequences and coupling patterns.

Authors:  Yung-Hao Wong; Tzong-Yi Lee; Han-Kuen Liang; Chia-Mao Huang; Ting-Yuan Wang; Yi-Huan Yang; Chia-Huei Chu; Hsien-Da Huang; Ming-Tat Ko; Jenn-Kang Hwang
Journal:  Nucleic Acids Res       Date:  2007-05-21       Impact factor: 16.971

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  1 in total

1.  Subcellular Proteomics as a Unified Approach of Experimental Localizations and Computed Prediction Data for Arabidopsis and Crop Plants.

Authors:  Cornelia M Hooper; Ian R Castleden; Sandra K Tanz; Sally V Grasso; A Harvey Millar
Journal:  Adv Exp Med Biol       Date:  2021       Impact factor: 2.622

  1 in total

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