Literature DB >> 11296251

Similarities between the DNA replication initiators of Gram-negative bacteria plasmids (RepA) and eukaryotes (Orc4p)/archaea (Cdc6p).

R Giraldo1, R Diaz-Orejas.   

Abstract

The proteins responsible for the initiation of DNA replication are thought to be essentially unrelated in bacteria and archaea/eukaryotes. Here we show that RepA, the initiator from the Pseudomonas plasmid pPS10, and the C-terminal domain of ScOrc4p, a subunit of Saccharomyces cerevisiae (Sc) origin recognition complex (ORC), share sequence similarities. Based on biochemical and spectroscopic evidence, these similarities include common structural elements, such as a winged-helix domain and a leucine-zipper dimerization motif. We have also found that ScOrc4p, as previously described for RepA-type initiators, interacts with chaperones of the Hsp70 family both in vitro and in vivo, most probably to regulate the assembly of active ORC. In evolutionary terms, our results are compatible with the recruitment of the same protein module for initiation of DNA replication by the ancestors of present-day Gram-negative bacteria plasmids, archaea, and eukaryotes.

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Year:  2001        PMID: 11296251      PMCID: PMC33142          DOI: 10.1073/pnas.081079298

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  38 in total

1.  Protein domains and conformational changes in the activation of RepA, a DNA replication initiator.

Authors:  R Giraldo; J M Andreu; R Díaz-Orejas
Journal:  EMBO J       Date:  1998-08-03       Impact factor: 11.598

2.  The universal ancestor.

Authors:  C Woese
Journal:  Proc Natl Acad Sci U S A       Date:  1998-06-09       Impact factor: 11.205

Review 3.  Replication and control of circular bacterial plasmids.

Authors:  G del Solar; R Giraldo; M J Ruiz-Echevarría; M Espinosa; R Díaz-Orejas
Journal:  Microbiol Mol Biol Rev       Date:  1998-06       Impact factor: 11.056

Review 4.  Archaea and the prokaryote-to-eukaryote transition.

Authors:  J R Brown; W F Doolittle
Journal:  Microbiol Mol Biol Rev       Date:  1997-12       Impact factor: 11.056

Review 5.  Polymerases and the replisome: machines within machines.

Authors:  T A Baker; S P Bell
Journal:  Cell       Date:  1998-02-06       Impact factor: 41.582

Review 6.  The Hsp70 and Hsp60 chaperone machines.

Authors:  B Bukau; A L Horwich
Journal:  Cell       Date:  1998-02-06       Impact factor: 41.582

7.  Architecture of the yeast origin recognition complex bound to origins of DNA replication.

Authors:  D G Lee; S P Bell
Journal:  Mol Cell Biol       Date:  1997-12       Impact factor: 4.272

8.  CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice.

Authors:  J D Thompson; D G Higgins; T J Gibson
Journal:  Nucleic Acids Res       Date:  1994-11-11       Impact factor: 16.971

9.  Human Hsp70 and Hsp40 chaperone proteins facilitate human papillomavirus-11 E1 protein binding to the origin and stimulate cell-free DNA replication.

Authors:  J S Liu; S R Kuo; A M Makhov; D M Cyr; J D Griffith; T R Broker; L T Chow
Journal:  J Biol Chem       Date:  1998-11-13       Impact factor: 5.157

10.  Crystal structure of the eukaryotic DNA polymerase processivity factor PCNA.

Authors:  T S Krishna; X P Kong; S Gary; P M Burgers; J Kuriyan
Journal:  Cell       Date:  1994-12-30       Impact factor: 41.582

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  14 in total

1.  Sequential and ordered assembly of E1 initiator complexes on the papillomavirus origin of DNA replication generates progressive structural changes related to melting.

Authors:  Grace Chen; Arne Stenlund
Journal:  Mol Cell Biol       Date:  2002-11       Impact factor: 4.272

2.  ATPase-dependent cooperative binding of ORC and Cdc6 to origin DNA.

Authors:  Christian Speck; Zhiqiang Chen; Huilin Li; Bruce Stillman
Journal:  Nat Struct Mol Biol       Date:  2005-11       Impact factor: 15.369

3.  Extrachromosomal element capture and the evolution of multiple replication origins in archaeal chromosomes.

Authors:  Nicholas P Robinson; Stephen D Bell
Journal:  Proc Natl Acad Sci U S A       Date:  2007-03-28       Impact factor: 11.205

4.  Structural basis for regulation of bifunctional roles in replication initiator protein.

Authors:  Akira Nakamura; Chieko Wada; Kunio Miki
Journal:  Proc Natl Acad Sci U S A       Date:  2007-11-13       Impact factor: 11.205

5.  Evolutionary link between the mycobacterial plasmid pAL5000 replication protein RepB and the extracytoplasmic function family of σ factors.

Authors:  Arnab Basu; Sujoy Chatterjee; Soniya Chatterjee; Sujoy K Das Gupta
Journal:  J Bacteriol       Date:  2012-01-13       Impact factor: 3.490

6.  BAG3, a host cochaperone, facilitates varicella-zoster virus replication.

Authors:  Christos A Kyratsous; Saul J Silverstein
Journal:  J Virol       Date:  2007-05-02       Impact factor: 5.103

Review 7.  Plasmid R6K replication control.

Authors:  Sheryl A Rakowski; Marcin Filutowicz
Journal:  Plasmid       Date:  2013-03-05       Impact factor: 3.466

8.  Chaperone proteins abrogate inhibition of the human papillomavirus (HPV) E1 replicative helicase by the HPV E2 protein.

Authors:  Biing Yuan Lin; Alexander M Makhov; Jack D Griffith; Thomas R Broker; Louise T Chow
Journal:  Mol Cell Biol       Date:  2002-09       Impact factor: 4.272

9.  An archaeal chromosomal autonomously replicating sequence element from an extreme halophile, Halobacterium sp. strain NRC-1.

Authors:  Brian R Berquist; Shiladitya DasSarma
Journal:  J Bacteriol       Date:  2003-10       Impact factor: 3.490

10.  Deep sequencing-based analysis of the anaerobic stimulon in Neisseria gonorrhoeae.

Authors:  Vincent M Isabella; Virginia L Clark
Journal:  BMC Genomics       Date:  2011-01-20       Impact factor: 3.969

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