Literature DB >> 22102250

Crystallization and preliminary X-ray crystallographic analysis of putative tRNA-modification enzymes from Pyrococcus furiosus and Thermus thermophilus.

Marcus Fislage1, Martine Roovers, Stefan Münnich, Louis Droogmans, Wim Versées.   

Abstract

Methyltransferases form a major class of tRNA-modifying enzymes that are needed for the proper functioning of tRNA. Here, the expression, purification and crystallization of two related putative tRNA methyltransferases from two kingdoms of life are reported. The protein encoded by the gene pf1002 from the archaeon Pyrococcus furiosus was crystallized in the monoclinic space group P2(1). A complete data set was collected to 2.2 Å resolution. The protein encoded by the gene ttc1157 from the eubacterium Thermus thermophilus was crystallized in the trigonal space group P3(2)21. A complete data set was collected to 2.05 Å resolution.
© 2011 International Union of Crystallography. All rights reserved.

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Year:  2011        PMID: 22102250      PMCID: PMC3212469          DOI: 10.1107/S1744309111036347

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  15 in total

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Authors:  Anita K Hopper; Eric M Phizicky
Journal:  Genes Dev       Date:  2003-01-15       Impact factor: 11.361

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Authors:  Jean Armengaud; Jaunius Urbonavicius; Bernard Fernandez; Guylaine Chaussinand; Janusz M Bujnicki; Henri Grosjean
Journal:  J Biol Chem       Date:  2004-06-20       Impact factor: 5.157

Review 3.  tRNA stabilization by modified nucleotides.

Authors:  Yuri Motorin; Mark Helm
Journal:  Biochemistry       Date:  2010-06-22       Impact factor: 3.162

4.  Crystal structure of Bacillus anthracis ThiI, a tRNA-modifying enzyme containing the predicted RNA-binding THUMP domain.

Authors:  David G Waterman; Miguel Ortiz-Lombardía; Mark J Fogg; Eugene V Koonin; Alfred A Antson
Journal:  J Mol Biol       Date:  2005-11-22       Impact factor: 5.469

5.  Protein structure prediction on the Web: a case study using the Phyre server.

Authors:  Lawrence A Kelley; Michael J E Sternberg
Journal:  Nat Protoc       Date:  2009       Impact factor: 13.491

Review 6.  RNA nucleotide methylation.

Authors:  Yuri Motorin; Mark Helm
Journal:  Wiley Interdiscip Rev RNA       Date:  2011-03-23       Impact factor: 9.957

7.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

8.  Cleavage of structural proteins during the assembly of the head of bacteriophage T4.

Authors:  U K Laemmli
Journal:  Nature       Date:  1970-08-15       Impact factor: 49.962

9.  Functional specialization of domains tandemly duplicated within 16S rRNA methyltransferase RsmC.

Authors:  S Sunita; Elzbieta Purta; Malgorzata Durawa; Karolina L Tkaczuk; J Swaathi; Janusz M Bujnicki; J Sivaraman
Journal:  Nucleic Acids Res       Date:  2007-06-18       Impact factor: 16.971

10.  Phaser crystallographic software.

Authors:  Airlie J McCoy; Ralf W Grosse-Kunstleve; Paul D Adams; Martyn D Winn; Laurent C Storoni; Randy J Read
Journal:  J Appl Crystallogr       Date:  2007-07-13       Impact factor: 3.304

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  3 in total

1.  The open reading frame TTC1157 of Thermus thermophilus HB27 encodes the methyltransferase forming N²-methylguanosine at position 6 in tRNA.

Authors:  Martine Roovers; Yamina Oudjama; Marcus Fislage; Janusz M Bujnicki; Wim Versées; Louis Droogmans
Journal:  RNA       Date:  2012-02-15       Impact factor: 4.942

2.  Crystal structures of the tRNA:m2G6 methyltransferase Trm14/TrmN from two domains of life.

Authors:  Marcus Fislage; Martine Roovers; Irina Tuszynska; Janusz M Bujnicki; Louis Droogmans; Wim Versées
Journal:  Nucleic Acids Res       Date:  2012-02-22       Impact factor: 16.971

Review 3.  Transfer RNA Modification Enzymes from Thermophiles and Their Modified Nucleosides in tRNA.

Authors:  Hiroyuki Hori; Takuya Kawamura; Takako Awai; Anna Ochi; Ryota Yamagami; Chie Tomikawa; Akira Hirata
Journal:  Microorganisms       Date:  2018-10-20
  3 in total

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