Literature DB >> 11252807

Annotating sequence data using Genotator.

N L Harris1.   

Abstract

In this postgenomic era, it is no longer necessary to argue the need for automated methods for sequence annotation. Many researchers have designed tools for analyzing DNA sequences, but running multiple tools and interpreting the results can be tedious and confusing. In the last few years, many analysis workbenches have been developed to help streamline the process of sequence annotation. Genotator, developed in 1996, is still a popular choice owing to its ease of use and its configurability. This article will review annotating sequence data using the Genotator.

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Year:  2000        PMID: 11252807     DOI: 10.1385/MB:16:3:221

Source DB:  PubMed          Journal:  Mol Biotechnol        ISSN: 1073-6085            Impact factor:   2.695


  10 in total

1.  Viral genome organizer: a system for analyzing complete viral genomes.

Authors:  C Upton; D Hogg; D Perrin; M Boone; N L Harris
Journal:  Virus Res       Date:  2000-09       Impact factor: 3.303

2.  Basic local alignment search tool.

Authors:  S F Altschul; W Gish; W Miller; E W Myers; D J Lipman
Journal:  J Mol Biol       Date:  1990-10-05       Impact factor: 5.469

3.  GenBank.

Authors:  D A Benson; M S Boguski; D J Lipman; J Ostell; B F Ouellette
Journal:  Nucleic Acids Res       Date:  1998-01-01       Impact factor: 16.971

4.  A generalized hidden Markov model for the recognition of human genes in DNA.

Authors:  D Kulp; D Haussler; M G Reese; F H Eeckman
Journal:  Proc Int Conf Intell Syst Mol Biol       Date:  1996

5.  Genotator: a workbench for sequence annotation.

Authors:  N L Harris
Journal:  Genome Res       Date:  1997-07       Impact factor: 9.043

6.  Complete sequence of the human tissue factor gene, a highly regulated cellular receptor that initiates the coagulation protease cascade.

Authors:  N Mackman; J H Morrissey; B Fowler; T S Edgington
Journal:  Biochemistry       Date:  1989-02-21       Impact factor: 3.162

7.  Prediction of complete gene structures in human genomic DNA.

Authors:  C Burge; S Karlin
Journal:  J Mol Biol       Date:  1997-04-25       Impact factor: 5.469

8.  A probabilistic model for detecting coding regions in DNA sequences.

Authors:  A Thomas; M H Skolnick
Journal:  IMA J Math Appl Med Biol       Date:  1994

9.  A workbench for large-scale sequence homology analysis.

Authors:  E L Sonnhammer; R Durbin
Journal:  Comput Appl Biosci       Date:  1994-06

10.  The turning point in genome research.

Authors:  M S Boguski
Journal:  Trends Biochem Sci       Date:  1995-08       Impact factor: 13.807

  10 in total
  2 in total

1.  Djinn Lite: a tool for customised gene transcript modelling, annotation-data enrichment and exploration.

Authors:  Erdahl T Teber; Edward Crawford; Kent B Bolton; Derek Van Dyk; Peter R Schofield; Vimal Kapoor; W Bret Church
Journal:  BMC Bioinformatics       Date:  2006-01-23       Impact factor: 3.169

2.  Genoviz Software Development Kit: Java tool kit for building genomics visualization applications.

Authors:  Gregg A Helt; John W Nicol; Ed Erwin; Eric Blossom; Steven G Blanchard; Stephen A Chervitz; Cyrus Harmon; Ann E Loraine
Journal:  BMC Bioinformatics       Date:  2009-08-25       Impact factor: 3.169

  2 in total

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