Literature DB >> 11237640

Accurate measurement of translational diffusion coefficients: a practical method to account for nonlinear gradients.

P Damberg1, J Jarvet, A Gräslund.   

Abstract

For NMR probes equipped with pulsed field gradient coils, which are not optimized for gradient linearity, the precision and accuracy of experimentally measured translational diffusion coefficients are limited by the linearity of the gradient pulses over the sample volume. This study shows that the accuracy and precision of measured diffusion coefficients by the Stejskal--Tanner spin-echo pulsed field gradient experiment can be significantly improved by mapping the gradient z-profile and by using the mapped calibration parameters in the data analysis. For practical applications the gradient distribution may be approximated by a truncated linear distribution defined by minimum and maximum values of the gradient. By including the truncated linear gradient distribution function in the Stejskal--Tanner equation, the systematic deviation between the fitted curve and the experimental attenuation curve decreases by an order of magnitude. The gradient distribution may be calibrated using an intense NMR signal from a sample with a known diffusion coefficient. The diffusion coefficient of an unknown sample may then be determined from a two-parameter fit, using the known gradient distribution function. Copyright 2001 Academic Press.

Year:  2001        PMID: 11237640     DOI: 10.1006/jmre.2000.2260

Source DB:  PubMed          Journal:  J Magn Reson        ISSN: 1090-7807            Impact factor:   2.229


  15 in total

1.  Structural analysis of the exopolysaccharide produced by Streptococcus thermophilus ST1 solely by NMR spectroscopy.

Authors:  Elin Säwén; Eine Huttunen; Xue Zhang; Zhennai Yang; Göran Widmalm
Journal:  J Biomol NMR       Date:  2010-06       Impact factor: 2.835

2.  Physicochemical code for quinary protein interactions in Escherichia coli.

Authors:  Xin Mu; Seongil Choi; Lisa Lang; David Mowray; Nikolay V Dokholyan; Jens Danielsson; Mikael Oliveberg
Journal:  Proc Natl Acad Sci U S A       Date:  2017-05-23       Impact factor: 11.205

3.  (13)C-(1)H NMR relaxation and fluorescence anisotropy decay study of tyrosine dynamics in motilin.

Authors:  Peter Damberg; Jüri Jarvet; Peter Allard; Ulo Mets; Rudolf Rigler; Astrid Gräslund
Journal:  Biophys J       Date:  2002-11       Impact factor: 4.033

4.  Delineating the conformational flexibility of trisaccharides from NMR spectroscopy experiments and computer simulations.

Authors:  Mingjun Yang; Thibault Angles d'Ortoli; Elin Säwén; Madhurima Jana; Göran Widmalm; Alexander D MacKerell
Journal:  Phys Chem Chem Phys       Date:  2016-06-27       Impact factor: 3.676

5.  Structural characterization of AS1-membrane interactions from a subset of HAMP domains.

Authors:  Sofia Unnerståle; Lena Mäler; Roger R Draheim
Journal:  Biochim Biophys Acta       Date:  2011-07-06

6.  Dynamics in the cyclic Enterobacterial common antigen as studied by 13C NMR relaxation.

Authors:  August Andersson; Asa Ahl; Robert Eklund; Göran Widmalm; Lena Mäler
Journal:  J Biomol NMR       Date:  2005-04       Impact factor: 2.835

7.  Dynamics of transportan in bicelles is surface charge dependent.

Authors:  Elsa Bárány-Wallje; August Andersson; Astrid Gräslund; Lena Mäler
Journal:  J Biomol NMR       Date:  2006-05-17       Impact factor: 2.835

8.  The intrinsically disordered RNR inhibitor Sml1 is a dynamic dimer.

Authors:  Jens Danielsson; Leena Liljedahl; Elsa Bárány-Wallje; Pernille Sønderby; Line Hyltoft Kristensen; Maria A Martinez-Yamout; H Jane Dyson; Peter E Wright; Flemming M Poulsen; Lena Mäler; Astrid Gräslund; Birthe B Kragelund
Journal:  Biochemistry       Date:  2008-12-16       Impact factor: 3.162

9.  Positioning of the Alzheimer Abeta(1-40) peptide in SDS micelles using NMR and paramagnetic probes.

Authors:  Jüri Jarvet; Jens Danielsson; Peter Damberg; Marta Oleszczuk; Astrid Gräslund
Journal:  J Biomol NMR       Date:  2007-07-27       Impact factor: 2.835

10.  Membrane Interaction of the Glycosyltransferase WaaG.

Authors:  Jobst Liebau; Pontus Pettersson; Scarlett Szpryngiel; Lena Mäler
Journal:  Biophys J       Date:  2015-08-04       Impact factor: 4.033

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