Literature DB >> 11237015

The physical maps for sequencing human chromosomes 1, 6, 9, 10, 13, 20 and X.

D R Bentley1, P Deloukas, A Dunham, L French, S G Gregory, S J Humphray, A J Mungall, M T Ross, N P Carter, I Dunham, C E Scott, K J Ashcroft, A L Atkinson, K Aubin, D M Beare, G Bethel, N Brady, J C Brook, D C Burford, W D Burrill, C Burrows, A P Butler, C Carder, J J Catanese, C M Clee, S M Clegg, V Cobley, A J Coffey, C G Cole, J E Collins, J S Conquer, R A Cooper, K M Culley, E Dawson, F L Dearden, R M Durbin, P J de Jong, P D Dhami, M E Earthrowl, C A Edwards, R S Evans, C J Gillson, J Ghori, L Green, R Gwilliam, K S Halls, S Hammond, G L Harper, R W Heathcott, J L Holden, E Holloway, B L Hopkins, P J Howard, G R Howell, E J Huckle, J Hughes, P J Hunt, S E Hunt, M Izmajlowicz, C A Jones, S S Joseph, G Laird, C F Langford, M H Lehvaslaiho, M A Leversha, O T McCann, L M McDonald, J McDowall, G L Maslen, D Mistry, N K Moschonas, V Neocleous, D M Pearson, K J Phillips, K M Porter, S R Prathalingam, Y H Ramsey, S A Ranby, C M Rice, J Rogers, L J Rogers, T Sarafidou, D J Scott, G J Sharp, C J Shaw-Smith, L J Smink, C Soderlund, E C Sotheran, H E Steingruber, J E Sulston, A Taylor, R G Taylor, A A Thorpe, E Tinsley, G L Warry, A Whittaker, P Whittaker, S H Williams, T E Wilmer, R Wooster, C L Wright.   

Abstract

We constructed maps for eight chromosomes (1, 6, 9, 10, 13, 20, X and (previously) 22), representing one-third of the genome, by building landmark maps, isolating bacterial clones and assembling contigs. By this approach, we could establish the long-range organization of the maps early in the project, and all contig extension, gap closure and problem-solving was simplified by containment within local regions. The maps currently represent more than 94% of the euchromatic (gene-containing) regions of these chromosomes in 176 contigs, and contain 96% of the chromosome-specific markers in the human gene map. By measuring the remaining gaps, we can assess chromosome length and coverage in sequenced clones.

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Year:  2001        PMID: 11237015     DOI: 10.1038/35057165

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  13 in total

1.  Assembly of the working draft of the human genome with GigAssembler.

Authors:  W J Kent; D Haussler
Journal:  Genome Res       Date:  2001-09       Impact factor: 9.043

2.  Segmental duplications: organization and impact within the current human genome project assembly.

Authors:  J A Bailey; A M Yavor; H F Massa; B J Trask; E E Eichler
Journal:  Genome Res       Date:  2001-06       Impact factor: 9.043

3.  Locating sequence on FPC maps and selecting a minimal tiling path.

Authors:  Friedrich W Engler; James Hatfield; William Nelson; Carol A Soderlund
Journal:  Genome Res       Date:  2003-08-12       Impact factor: 9.043

4.  Radiation hybrid map of the porcine genome comprising 2035 EST loci.

Authors:  Anette Rink; Katie Eyer; Benjamin Roelofs; Kimberly J Priest; Kathleen J Sharkey-Brockmeier; Sudkamon Lekhong; Elif K Karajusuf; Jason Bang; Martine Yerle; Denis Milan; Wan-Sheng Liu; Craig W Beattie
Journal:  Mamm Genome       Date:  2006-08-04       Impact factor: 2.957

Review 5.  Methods and strategies for analyzing copy number variation using DNA microarrays.

Authors:  Nigel P Carter
Journal:  Nat Genet       Date:  2007-07       Impact factor: 38.330

6.  The DNA sequence of the human X chromosome.

Authors:  Mark T Ross; Darren V Grafham; Alison J Coffey; Steven Scherer; Kirsten McLay; Donna Muzny; Matthias Platzer; Gareth R Howell; Christine Burrows; Christine P Bird; Adam Frankish; Frances L Lovell; Kevin L Howe; Jennifer L Ashurst; Robert S Fulton; Ralf Sudbrak; Gaiping Wen; Matthew C Jones; Matthew E Hurles; T Daniel Andrews; Carol E Scott; Stephen Searle; Juliane Ramser; Adam Whittaker; Rebecca Deadman; Nigel P Carter; Sarah E Hunt; Rui Chen; Andrew Cree; Preethi Gunaratne; Paul Havlak; Anne Hodgson; Michael L Metzker; Stephen Richards; Graham Scott; David Steffen; Erica Sodergren; David A Wheeler; Kim C Worley; Rachael Ainscough; Kerrie D Ambrose; M Ali Ansari-Lari; Swaroop Aradhya; Robert I S Ashwell; Anne K Babbage; Claire L Bagguley; Andrea Ballabio; Ruby Banerjee; Gary E Barker; Karen F Barlow; Ian P Barrett; Karen N Bates; David M Beare; Helen Beasley; Oliver Beasley; Alfred Beck; Graeme Bethel; Karin Blechschmidt; Nicola Brady; Sarah Bray-Allen; Anne M Bridgeman; Andrew J Brown; Mary J Brown; David Bonnin; Elspeth A Bruford; Christian Buhay; Paula Burch; Deborah Burford; Joanne Burgess; Wayne Burrill; John Burton; Jackie M Bye; Carol Carder; Laura Carrel; Joseph Chako; Joanne C Chapman; Dean Chavez; Ellson Chen; Guan Chen; Yuan Chen; Zhijian Chen; Craig Chinault; Alfredo Ciccodicola; Sue Y Clark; Graham Clarke; Chris M Clee; Sheila Clegg; Kerstin Clerc-Blankenburg; Karen Clifford; Vicky Cobley; Charlotte G Cole; Jen S Conquer; Nicole Corby; Richard E Connor; Robert David; Joy Davies; Clay Davis; John Davis; Oliver Delgado; Denise Deshazo; Pawandeep Dhami; Yan Ding; Huyen Dinh; Steve Dodsworth; Heather Draper; Shannon Dugan-Rocha; Andrew Dunham; Matthew Dunn; K James Durbin; Ireena Dutta; Tamsin Eades; Matthew Ellwood; Alexandra Emery-Cohen; Helen Errington; Kathryn L Evans; Louisa Faulkner; Fiona Francis; John Frankland; Audrey E Fraser; Petra Galgoczy; James Gilbert; Rachel Gill; Gernot Glöckner; Simon G Gregory; Susan Gribble; Coline Griffiths; Russell Grocock; Yanghong Gu; Rhian Gwilliam; Cerissa Hamilton; Elizabeth A Hart; Alicia Hawes; Paul D Heath; Katja Heitmann; Steffen Hennig; Judith Hernandez; Bernd Hinzmann; Sarah Ho; Michael Hoffs; Phillip J Howden; Elizabeth J Huckle; Jennifer Hume; Paul J Hunt; Adrienne R Hunt; Judith Isherwood; Leni Jacob; David Johnson; Sally Jones; Pieter J de Jong; Shirin S Joseph; Stephen Keenan; Susan Kelly; Joanne K Kershaw; Ziad Khan; Petra Kioschis; Sven Klages; Andrew J Knights; Anna Kosiura; Christie Kovar-Smith; Gavin K Laird; Cordelia Langford; Stephanie Lawlor; Margaret Leversha; Lora Lewis; Wen Liu; Christine Lloyd; David M Lloyd; Hermela Loulseged; Jane E Loveland; Jamieson D Lovell; Ryan Lozado; Jing Lu; Rachael Lyne; Jie Ma; Manjula Maheshwari; Lucy H Matthews; Jennifer McDowall; Stuart McLaren; Amanda McMurray; Patrick Meidl; Thomas Meitinger; Sarah Milne; George Miner; Shailesh L Mistry; Margaret Morgan; Sidney Morris; Ines Müller; James C Mullikin; Ngoc Nguyen; Gabriele Nordsiek; Gerald Nyakatura; Christopher N O'Dell; Geoffery Okwuonu; Sophie Palmer; Richard Pandian; David Parker; Julia Parrish; Shiran Pasternak; Dina Patel; Alex V Pearce; Danita M Pearson; Sarah E Pelan; Lesette Perez; Keith M Porter; Yvonne Ramsey; Kathrin Reichwald; Susan Rhodes; Kerry A Ridler; David Schlessinger; Mary G Schueler; Harminder K Sehra; Charles Shaw-Smith; Hua Shen; Elizabeth M Sheridan; Ratna Shownkeen; Carl D Skuce; Michelle L Smith; Elizabeth C Sotheran; Helen E Steingruber; Charles A Steward; Roy Storey; R Mark Swann; David Swarbreck; Paul E Tabor; Stefan Taudien; Tineace Taylor; Brian Teague; Karen Thomas; Andrea Thorpe; Kirsten Timms; Alan Tracey; Steve Trevanion; Anthony C Tromans; Michele d'Urso; Daniel Verduzco; Donna Villasana; Lenee Waldron; Melanie Wall; Qiaoyan Wang; James Warren; Georgina L Warry; Xuehong Wei; Anthony West; Siobhan L Whitehead; Mathew N Whiteley; Jane E Wilkinson; David L Willey; Gabrielle Williams; Leanne Williams; Angela Williamson; Helen Williamson; Laurens Wilming; Rebecca L Woodmansey; Paul W Wray; Jennifer Yen; Jingkun Zhang; Jianling Zhou; Huda Zoghbi; Sara Zorilla; David Buck; Richard Reinhardt; Annemarie Poustka; André Rosenthal; Hans Lehrach; Alfons Meindl; Patrick J Minx; Ladeana W Hillier; Huntington F Willard; Richard K Wilson; Robert H Waterston; Catherine M Rice; Mark Vaudin; Alan Coulson; David L Nelson; George Weinstock; John E Sulston; Richard Durbin; Tim Hubbard; Richard A Gibbs; Stephan Beck; Jane Rogers; David R Bentley
Journal:  Nature       Date:  2005-03-17       Impact factor: 49.962

7.  The DNA sequence and analysis of human chromosome 13.

Authors:  A Dunham; L H Matthews; J Burton; J L Ashurst; K L Howe; K J Ashcroft; D M Beare; D C Burford; S E Hunt; S Griffiths-Jones; M C Jones; S J Keenan; K Oliver; C E Scott; R Ainscough; J P Almeida; K D Ambrose; D T Andrews; R I S Ashwell; A K Babbage; C L Bagguley; J Bailey; R Bannerjee; K F Barlow; K Bates; H Beasley; C P Bird; S Bray-Allen; A J Brown; J Y Brown; W Burrill; C Carder; N P Carter; J C Chapman; M E Clamp; S Y Clark; G Clarke; C M Clee; S C M Clegg; V Cobley; J E Collins; N Corby; G J Coville; P Deloukas; P Dhami; I Dunham; M Dunn; M E Earthrowl; A G Ellington; L Faulkner; A G Frankish; J Frankland; L French; P Garner; J Garnett; J G R Gilbert; C J Gilson; J Ghori; D V Grafham; S M Gribble; C Griffiths; R E Hall; S Hammond; J L Harley; E A Hart; P D Heath; P J Howden; E J Huckle; P J Hunt; A R Hunt; C Johnson; D Johnson; M Kay; A M Kimberley; A King; G K Laird; C J Langford; S Lawlor; D A Leongamornlert; D M Lloyd; C Lloyd; J E Loveland; J Lovell; S Martin; M Mashreghi-Mohammadi; S J McLaren; A McMurray; S Milne; M J F Moore; T Nickerson; S A Palmer; A V Pearce; A I Peck; S Pelan; B Phillimore; K M Porter; C M Rice; S Searle; H K Sehra; R Shownkeen; C D Skuce; M Smith; C A Steward; N Sycamore; J Tester; D W Thomas; A Tracey; A Tromans; B Tubby; M Wall; J M Wallis; A P West; S L Whitehead; D L Willey; L Wilming; P W Wray; M W Wright; L Young; A Coulson; R Durbin; T Hubbard; J E Sulston; S Beck; D R Bentley; J Rogers; M T Ross
Journal:  Nature       Date:  2004-04-01       Impact factor: 49.962

8.  DNA sequence and analysis of human chromosome 9.

Authors:  S J Humphray; K Oliver; A R Hunt; R W Plumb; J E Loveland; K L Howe; T D Andrews; S Searle; S E Hunt; C E Scott; M C Jones; R Ainscough; J P Almeida; K D Ambrose; R I S Ashwell; A K Babbage; S Babbage; C L Bagguley; J Bailey; R Banerjee; D J Barker; K F Barlow; K Bates; H Beasley; O Beasley; C P Bird; S Bray-Allen; A J Brown; J Y Brown; D Burford; W Burrill; J Burton; C Carder; N P Carter; J C Chapman; Y Chen; G Clarke; S Y Clark; C M Clee; S Clegg; R E Collier; N Corby; M Crosier; A T Cummings; J Davies; P Dhami; M Dunn; I Dutta; L W Dyer; M E Earthrowl; L Faulkner; C J Fleming; A Frankish; J A Frankland; L French; D G Fricker; P Garner; J Garnett; J Ghori; J G R Gilbert; C Glison; D V Grafham; S Gribble; C Griffiths; S Griffiths-Jones; R Grocock; J Guy; R E Hall; S Hammond; J L Harley; E S I Harrison; E A Hart; P D Heath; C D Henderson; B L Hopkins; P J Howard; P J Howden; E Huckle; C Johnson; D Johnson; A A Joy; M Kay; S Keenan; J K Kershaw; A M Kimberley; A King; A Knights; G K Laird; C Langford; S Lawlor; D A Leongamornlert; M Leversha; C Lloyd; D M Lloyd; J Lovell; S Martin; M Mashreghi-Mohammadi; L Matthews; S McLaren; K E McLay; A McMurray; S Milne; T Nickerson; J Nisbett; G Nordsiek; A V Pearce; A I Peck; K M Porter; R Pandian; S Pelan; B Phillimore; S Povey; Y Ramsey; V Rand; M Scharfe; H K Sehra; R Shownkeen; S K Sims; C D Skuce; M Smith; C A Steward; D Swarbreck; N Sycamore; J Tester; A Thorpe; A Tracey; A Tromans; D W Thomas; M Wall; J M Wallis; A P West; S L Whitehead; D L Willey; S A Williams; L Wilming; P W Wray; L Young; J L Ashurst; A Coulson; H Blöcker; R Durbin; J E Sulston; T Hubbard; M J Jackson; D R Bentley; S Beck; J Rogers; I Dunham
Journal:  Nature       Date:  2004-05-27       Impact factor: 49.962

9.  Human paralogs of KIAA0187 were created through independent pericentromeric-directed and chromosome-specific duplication mechanisms.

Authors:  Moira Crosier; Luigi Viggiano; Jane Guy; Doriana Misceo; Robert Stones; Wenbin Wei; Tom Hearn; Mario Ventura; Nicoletta Archidiacono; Mariano Rocchi; Michael S Jackson
Journal:  Genome Res       Date:  2002-01       Impact factor: 9.043

10.  Small regions of overlapping deletions on 6q26 in human astrocytic tumours identified using chromosome 6 tile path array-CGH.

Authors:  K Ichimura; A J Mungall; H Fiegler; D M Pearson; I Dunham; N P Carter; V Peter Collins
Journal:  Oncogene       Date:  2006-02-23       Impact factor: 9.867

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