Literature DB >> 11179898

Protein design based on folding models.

R Guerois1, L Serrano.   

Abstract

The basic rules governing the folding of small, single-domain proteins are being discovered. New algorithms that can predict the major features of the folding process give the opportunity to design and optimise protein folding in a rational way. Recent experimental works suggest that sequence-specific features should be integrated in folding models to improve their performance.

Mesh:

Year:  2001        PMID: 11179898     DOI: 10.1016/s0959-440x(00)00170-6

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  9 in total

1.  Surfing on protein folding energy landscapes.

Authors:  Joost W H Schymkowitz; Frederic Rousseau; Luis Serrano
Journal:  Proc Natl Acad Sci U S A       Date:  2002-12-02       Impact factor: 11.205

2.  Database-derived potentials dependent on protein size for in silico folding and design.

Authors:  Yves Dehouck; Dimitri Gilis; Marianne Rooman
Journal:  Biophys J       Date:  2004-07       Impact factor: 4.033

3.  Macromolecular crowding induces polypeptide compaction and decreases folding cooperativity.

Authors:  Douglas Tsao; Nikolay V Dokholyan
Journal:  Phys Chem Chem Phys       Date:  2010-04-14       Impact factor: 3.676

4.  Conserved and nonconserved features of the folding pathway of hisactophilin, a beta-trefoil protein.

Authors:  Chengsong Liu; Joe A Gaspar; Hannah J Wong; Elizabeth M Meiering
Journal:  Protein Sci       Date:  2002-03       Impact factor: 6.725

5.  Prediction of water and metal binding sites and their affinities by using the Fold-X force field.

Authors:  Joost W H Schymkowitz; Frederic Rousseau; Ivo C Martins; Jesper Ferkinghoff-Borg; Francois Stricher; Luis Serrano
Journal:  Proc Natl Acad Sci U S A       Date:  2005-07-08       Impact factor: 11.205

6.  Implicit solvent model estimates of the stability of model structures of the alamethicin channel.

Authors:  Amit Kessel; D Peter Tieleman; Nir Ben-Tal
Journal:  Eur Biophys J       Date:  2003-09-17       Impact factor: 1.733

7.  Prediction of protein domain with mRMR feature selection and analysis.

Authors:  Bi-Qing Li; Le-Le Hu; Lei Chen; Kai-Yan Feng; Yu-Dong Cai; Kuo-Chen Chou
Journal:  PLoS One       Date:  2012-06-15       Impact factor: 3.240

8.  The FoldX web server: an online force field.

Authors:  Joost Schymkowitz; Jesper Borg; Francois Stricher; Robby Nys; Frederic Rousseau; Luis Serrano
Journal:  Nucleic Acids Res       Date:  2005-07-01       Impact factor: 16.971

9.  DOMAC: an accurate, hybrid protein domain prediction server.

Authors:  Jianlin Cheng
Journal:  Nucleic Acids Res       Date:  2007-06-06       Impact factor: 16.971

  9 in total

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