Literature DB >> 11179888

Transcription factors: global and detailed views.

C W Müller1.   

Abstract

During the past year, much progress has been made in understanding the structural basis of transcriptional regulation. Low-resolution electron microscopy structures of general transcription factor complexes have shed light on their global organization. These results are complemented by the structural and biochemical analysis of individual general transcription factors. High-resolution crystal structures of sequence-specific transcription factors still yield unexpected results. Detailed analysis of DNA recognition by different family members of the same class of sequence-specific transcription factors shows considerable variations in the way they interact with DNA.

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Year:  2001        PMID: 11179888     DOI: 10.1016/s0959-440x(00)00163-9

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  15 in total

1.  Structure of the conserved domain of ANAC, a member of the NAC family of transcription factors.

Authors:  Heidi A Ernst; Addie Nina Olsen; Sine Larsen; Leila Lo Leggio
Journal:  EMBO Rep       Date:  2004-03       Impact factor: 8.807

Review 2.  Origins of specificity in protein-DNA recognition.

Authors:  Remo Rohs; Xiangshu Jin; Sean M West; Rohit Joshi; Barry Honig; Richard S Mann
Journal:  Annu Rev Biochem       Date:  2010       Impact factor: 23.643

3.  Development of small molecules designed to modulate protein-protein interactions.

Authors:  Ye Che; Bernard R Brooks; Garland R Marshall
Journal:  J Comput Aided Mol Des       Date:  2006-04-19       Impact factor: 3.686

4.  Stimuli-responsive selection of target DNA sequences by synthetic bZIP peptides.

Authors:  Jesús Mosquera; Adrián Jiménez-Balsa; Verónica I Dodero; M Eugenio Vázquez; José L Mascareñas
Journal:  Nat Commun       Date:  2013       Impact factor: 14.919

5.  A structural view of the conserved domain of rice stress-responsive NAC1.

Authors:  Qingfeng Chen; Quan Wang; Lizhong Xiong; Zhiyong Lou
Journal:  Protein Cell       Date:  2011-02-20       Impact factor: 14.870

6.  Splice variant of the SND1 transcription factor is a dominant negative of SND1 members and their regulation in Populus trichocarpa.

Authors:  Quanzi Li; Ying-Chung Lin; Ying-Hsuan Sun; Jian Song; Hao Chen; Xing-Hai Zhang; Ronald R Sederoff; Vincent L Chiang
Journal:  Proc Natl Acad Sci U S A       Date:  2012-08-22       Impact factor: 11.205

7.  Structural basis for interaction between Mycobacterium smegmatis Ms6564, a TetR family master regulator, and its target DNA.

Authors:  Shifan Yang; Zengqiang Gao; Tingting Li; Min Yang; Tianyi Zhang; Yuhui Dong; Zheng-Guo He
Journal:  J Biol Chem       Date:  2013-06-26       Impact factor: 5.157

8.  A robust chromatin immunoprecipitation protocol for studying transcription factor-DNA interactions and histone modifications in wood-forming tissue.

Authors:  Wei Li; Ying-Chung Lin; Quanzi Li; Rui Shi; Chien-Yuan Lin; Hao Chen; Ling Chuang; Guan-Zheng Qu; Ronald R Sederoff; Vincent L Chiang
Journal:  Nat Protoc       Date:  2014-08-21       Impact factor: 13.491

9.  Crystal structure of the YgfZ protein from Escherichia coli suggests a folate-dependent regulatory role in one-carbon metabolism.

Authors:  Alexey Teplyakov; Galina Obmolova; Elif Sarikaya; Sadhana Pullalarevu; Wojciech Krajewski; Andrey Galkin; Andrew J Howard; Osnat Herzberg; Gary L Gilliland
Journal:  J Bacteriol       Date:  2004-11       Impact factor: 3.490

10.  SND1 transcription factor-directed quantitative functional hierarchical genetic regulatory network in wood formation in Populus trichocarpa.

Authors:  Ying-Chung Lin; Wei Li; Ying-Hsuan Sun; Sapna Kumari; Hairong Wei; Quanzi Li; Sermsawat Tunlaya-Anukit; Ronald R Sederoff; Vincent L Chiang
Journal:  Plant Cell       Date:  2013-11-26       Impact factor: 11.277

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