Literature DB >> 11175781

Great ape DNA sequences reveal a reduced diversity and an expansion in humans.

H Kaessmann1, V Wiebe, G Weiss, S Pääbo.   

Abstract

The extent of DNA sequence variation of chimpanzees is several-fold greater than that of humans. It is unclear, however, if humans or chimpanzees are exceptional among primates in having low and high amounts of DNA sequence diversity, respectively. To address this, we have determined approximately 10,000 bp of noncoding DNA sequences at Xq13.3 (which has been extensively studied in both humans and chimpanzees) from 10 western lowland gorillas (Gorilla gorilla gorilla) and 1 mountain gorilla (Gorilla gorilla beringei; that is, from 2 of the 3 currently recognized gorilla subspecies), as well as 8 Bornean (Pongo pygmaeus pygmaeus) and 6 Sumatran (Pongo pygmaeus abelii) orang-utans, representing both currently recognized orang-utan subspecies. We show that humans differ from the great apes in having a low level of genetic variation and a signal of population expansion.

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Year:  2001        PMID: 11175781     DOI: 10.1038/84773

Source DB:  PubMed          Journal:  Nat Genet        ISSN: 1061-4036            Impact factor:   38.330


  57 in total

1.  Evolution in a nutshell. EMBL PhD student symposium on evolution.

Authors:  Gáspár Jékely
Journal:  EMBO Rep       Date:  2002-04       Impact factor: 8.807

2.  Analysis of 5'-end sequences of chimpanzee cDNAs.

Authors:  Ryuichi Sakate; Naoki Osada; Munetomo Hida; Sumio Sugano; Ikuo Hayasaka; Naoko Shimohira; Shinsuke Yanagi; Yumiko Suto; Katsuyuki Hashimoto; Momoki Hirai
Journal:  Genome Res       Date:  2003-05       Impact factor: 9.043

3.  Bayes estimation of species divergence times and ancestral population sizes using DNA sequences from multiple loci.

Authors:  Bruce Rannala; Ziheng Yang
Journal:  Genetics       Date:  2003-08       Impact factor: 4.562

4.  Population size changes reshape genomic patterns of diversity.

Authors:  John E Pool; Rasmus Nielsen
Journal:  Evolution       Date:  2007-10-30       Impact factor: 3.694

Review 5.  Great ape genomics.

Authors:  Jeffrey D Wall
Journal:  ILAR J       Date:  2013

6.  A new approach to estimate parameters of speciation models with application to apes.

Authors:  Celine Becquet; Molly Przeworski
Journal:  Genome Res       Date:  2007-08-21       Impact factor: 9.043

7.  Mixed Race: Understanding Difference in the Genome Era.

Authors:  Elizabeth M Phillips; Adebola O Odunlami; Vence L Bonham
Journal:  Soc Forces       Date:  2007-12

8.  Nucleotide diversity in gorillas.

Authors:  Ning Yu; Michael I Jensen-Seaman; Leona Chemnick; Oliver Ryder; Wen-Hsiung Li
Journal:  Genetics       Date:  2004-03       Impact factor: 4.562

9.  Large differences between LINE-1 amplification rates in the human and chimpanzee lineages.

Authors:  Lauren M Mathews; Susan Y Chi; Noam Greenberg; Igor Ovchinnikov; Gary D Swergold
Journal:  Am J Hum Genet       Date:  2003-02-06       Impact factor: 11.025

10.  Human diallelic insertion/deletion polymorphisms.

Authors:  James L Weber; Donna David; Jeremy Heil; Ying Fan; Chengfeng Zhao; Gabor Marth
Journal:  Am J Hum Genet       Date:  2002-09-04       Impact factor: 11.025

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