Literature DB >> 11169573

Texture analysis of fluorescence lifetime images of nuclear DNA with effect of fluorescence resonance energy transfer.

S Murata 1, P Herman, J R Lakowicz.   

Abstract

BACKGROUND: Fluorescence lifetime imaging microscopy (FLIM) is becoming an important tool in cellular imaging. In FLIM, the image contrast is concentration insensitive, whereas it is sensitive to the local environment and interactions of fluorophores such as fluorescence resonance energy transfer (RET).
METHODS: Fluorescence microscopy, lifetime imaging, and texture analysis were used to study the spatial distribution of fluorophores bound to nuclear DNA. 3T3-Swiss albino mice fibroblast nuclei were labeled with Hoechst 33258 (Ho), an AT-specific dye, and 7-aminoactinomycin D (7-AAD), a GC-specific dye. Ho is a RET donor to the 7-AAD acceptor.
RESULTS: Texture analysis of 50 alcohol-fixed nuclei quantitatively showed changes of spatial distribution of apparent donor lifetimes. RET increased the spatial heterogeneity in the phase and modulation lifetime images. In most of the doubly stained cells (about 80%), the phase and modulation lifetime distributions were spatially homogeneous. In about 20% of the cells, we noticed that lower phase and modulation lifetimes caused by RET were correlated with regions of high Ho intensity in the nuclei.
CONCLUSIONS: The spatial lifetime heterogeneity of Ho in presence of 7-AAD seems to be caused by RET between closely spaced strands in the three dimensionally condensed regions of DNA. Copyright 2001 Wiley-Liss, Inc.

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Year:  2001        PMID: 11169573      PMCID: PMC6816255          DOI: 10.1002/1097-0320(20010201)43:2<94::aid-cyto1023>3.0.co;2-4

Source DB:  PubMed          Journal:  Cytometry        ISSN: 0196-4763


  25 in total

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2.  Differential effects of deuterium oxide on the fluorescence lifetimes and intensities of dyes with different modes of binding to DNA.

Authors:  B L Sailer; A J Nastasi; J G Valdez; J A Steinkamp; H A Crissman
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3.  Fluorescence polarization study of DNA--proflavine complexes.

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Journal:  Biopolymers       Date:  1969       Impact factor: 2.505

Review 4.  Energy transfer and binding competition between dyes used to enhance staining differentiation in metaphase chromosomes.

Authors:  E Sahar; S A Latt
Journal:  Chromosoma       Date:  1980       Impact factor: 4.316

5.  Criteria for the mode of binding of DNA binding agents.

Authors:  D Suh; J B Chaires
Journal:  Bioorg Med Chem       Date:  1995-06       Impact factor: 3.641

6.  Donor fluorescence decay analysis for energy transfer in double-helical DNA with various acceptor concentrations.

Authors:  S I Murata; J Kuśba; G Piszczek; I Gryczynski; J R Lakowicz
Journal:  Biopolymers       Date:  2000       Impact factor: 2.505

7.  Fluorescence lifetime imaging of nuclear DNA: effect of fluorescence resonance energy transfer.

Authors:  S Murata; P Herman; H J Lin; J R Lakowicz
Journal:  Cytometry       Date:  2000-11-01

8.  Fluorescence energy transfer between two triple helix-forming oligonucleotides bound to duplex DNA.

Authors:  J L Mergny; T Garestier; M Rougée; A V Lebedev; M Chassignol; N T Thuong; C Hélène
Journal:  Biochemistry       Date:  1994-12-27       Impact factor: 3.162

9.  Calcium imaging using fluorescence lifetimes and long-wavelength probes.

Authors:  J R Lakowicz; H Szmacinski; M L Johnson
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10.  Detection of DNA synthesis in interphase nuclei by fluorescence microscopy.

Authors:  S A Latt
Journal:  J Cell Biol       Date:  1974-08       Impact factor: 10.539

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  6 in total

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2.  3D-resolved investigation of the pH gradient in artificial skin constructs by means of fluorescence lifetime imaging.

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3.  Texture analysis of fluorescence lifetime images of AT- and GC-rich regions in nuclei.

Authors:  S Murata; P Herman; J R Lakowicz
Journal:  J Histochem Cytochem       Date:  2001-11       Impact factor: 2.479

Review 4.  Cytometric assessment of DNA damage in relation to cell cycle phase and apoptosis.

Authors:  Xuan Huang; H Dorota Halicka; Frank Traganos; Toshiki Tanaka; Akira Kurose; Zbigniew Darzynkiewicz
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5.  Application of microscopic Forster resonance energy transfer to cytological diagnosis of the thyroid tumors.

Authors:  Shin-ichi Murata; Petr Herman; Masanori Iwashina; Kunio Mochizuki; Tadao Nakazawa; Tetsuo Kondo; Nobuki Nakamura; Joseph R Lakowicz; Ryohei Katoh
Journal:  J Biomed Opt       Date:  2005 May-Jun       Impact factor: 3.170

6.  Tracking CNS and systemic sources of oxidative stress during the course of chronic neuroinflammation.

Authors:  Agata A Mossakowski; Julian Pohlan; Daniel Bremer; Randall Lindquist; Jason M Millward; Markus Bock; Karolin Pollok; Ronja Mothes; Leonard Viohl; Moritz Radbruch; Jenny Gerhard; Judith Bellmann-Strobl; Janina Behrens; Carmen Infante-Duarte; Anja Mähler; Michael Boschmann; Jan Leo Rinnenthal; Martina Füchtemeier; Josephine Herz; Florence C Pache; Markus Bardua; Josef Priller; Anja E Hauser; Friedemann Paul; Raluca Niesner; Helena Radbruch
Journal:  Acta Neuropathol       Date:  2015-10-31       Impact factor: 17.088

  6 in total

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