Literature DB >> 11167078

Integrated studies on plant biology using multiparallel techniques.

O Fiehn1, S Kloska, T Altmann.   

Abstract

Plant biology, especially the fields of molecular genetics and molecular physiology, is currently undergoing a change in paradigm from 'vertical' analysis of the role(s) of one or a few genes to 'horizontal' holistic approaches, studying the function of many or even all of the genes of an organism simultaneously. This change is leading us beyond genomes to transcriptomes, proteomes and metabalomes, and to an understanding of life at an entirely new level. Profiling strategies are putting this change into effect through the generation of large amounts of data, requiring that current bioinformatic approaches adapt and grow in order to make the most of these data.

Mesh:

Year:  2001        PMID: 11167078     DOI: 10.1016/s0958-1669(00)00165-8

Source DB:  PubMed          Journal:  Curr Opin Biotechnol        ISSN: 0958-1669            Impact factor:   9.740


  22 in total

Review 1.  Metabolomics--the link between genotypes and phenotypes.

Authors:  Oliver Fiehn
Journal:  Plant Mol Biol       Date:  2002-01       Impact factor: 4.076

2.  Purine and pyrimidine nucleotide synthesis and metabolism.

Authors:  Barbara A Moffatt; Hiroshi Ashihara
Journal:  Arabidopsis Book       Date:  2002-04-04

3.  Metabolomics and machine learning: explanatory analysis of complex metabolome data using genetic programming to produce simple, robust rules.

Authors:  Douglas B Kell
Journal:  Mol Biol Rep       Date:  2002       Impact factor: 2.316

4.  Dynamics of time-lagged gene-to-metabolite networks of Escherichia coli elucidated by integrative omics approach.

Authors:  Hiroki Takahashi; Ryoko Morioka; Ryosuke Ito; Taku Oshima; Md Altaf-Ul-Amin; Naotake Ogasawara; Shigehiko Kanaya
Journal:  OMICS       Date:  2010-09-23

5.  DNA microarrays for functional plant genomics.

Authors:  Asaph Aharoni; Oscar Vorst
Journal:  Plant Mol Biol       Date:  2002-01       Impact factor: 4.076

6.  A microarray-based comparative analysis of gene expression profiles during grain development in transgenic and wild type wheat.

Authors:  Per L Gregersen; Henrik Brinch-Pedersen; Preben B Holm
Journal:  Transgenic Res       Date:  2005-12       Impact factor: 2.788

7.  Correlation Network Analysis reveals a sequential reorganization of metabolic and transcriptional states during germination and gene-metabolite relationships in developing seedlings of Arabidopsis.

Authors:  Elizabeth Allen; Annick Moing; Timothy Md Ebbels; Mickaël Maucourt; A Deri Tomos; Dominique Rolin; Mark A Hooks
Journal:  BMC Syst Biol       Date:  2010-05-13

8.  Differential expression analysis by cDNA-AFLP of Saccharum spp. after inoculation with the host pathogen Sporisorium scitamineum.

Authors:  María Lao; Ariel D Arencibia; Elva R Carmona; Ricardo Acevedo; Eida Rodríguez; Ondina León; Ignacio Santana
Journal:  Plant Cell Rep       Date:  2008-04-01       Impact factor: 4.570

Review 9.  Metabolomics of neural progenitor cells: a novel approach to biomarker discovery.

Authors:  M Maletić-Savatić; L K Vingara; L N Manganas; Y Li; S Zhang; A Sierra; R Hazel; D Smith; M E Wagshul; F Henn; L Krupp; G Enikolopov; H Benveniste; P M Djurić; I Pelczer
Journal:  Cold Spring Harb Symp Quant Biol       Date:  2008-11-06

10.  Widely targeted metabolomics based on large-scale MS/MS data for elucidating metabolite accumulation patterns in plants.

Authors:  Yuji Sawada; Kenji Akiyama; Akane Sakata; Ayuko Kuwahara; Hitomi Otsuki; Tetsuya Sakurai; Kazuki Saito; Masami Yokota Hirai
Journal:  Plant Cell Physiol       Date:  2008-12-02       Impact factor: 4.927

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