Literature DB >> 11166654

Genome comparisons highlight similarity and diversity within the eukaryotic kingdoms.

C A Ball1, J M Cherry.   

Abstract

In 2000, the number of completely sequenced eukaryotic genomes increased to four. The addition of Drosophila and Arabidopsis into this cohort permits additional insights into the processes that have shaped evolution. Analysis and comparisons of both completed genomes and partially sequenced genomes have already shed light on mechanisms such as gene duplication and gene loss that have long been hypothesized to be major forces in speciation. Indeed, duplicate gene pairs in Saccharomyces, Arabidopsis, Caenorhabditis and Drosophila are high: 30%, 60%, 48% and 40%, respectively. Evidence of horizontal gene-transfer, thought to be a major evolutionary force in bacteria, has been found in Arabidopsis. The release of the 'first draft' of the human genome sequence in 2000 heralds a new stage of biological study. Understanding the as-yet-unannotated human genome will be largely based on conclusions, techniques and tools developed during the analysis and comparison of the genome of these four model organisms.

Entities:  

Mesh:

Year:  2001        PMID: 11166654      PMCID: PMC3040119          DOI: 10.1016/s1367-5931(00)00172-1

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.822


  18 in total

1.  The DNA sequence of human chromosome 21.

Authors:  M Hattori; A Fujiyama; T D Taylor; H Watanabe; T Yada; H S Park; A Toyoda; K Ishii; Y Totoki; D K Choi; Y Groner; E Soeda; M Ohki; T Takagi; Y Sakaki; S Taudien; K Blechschmidt; A Polley; U Menzel; J Delabar; K Kumpf; R Lehmann; D Patterson; K Reichwald; A Rump; M Schillhabel; A Schudy; W Zimmermann; A Rosenthal; J Kudoh; K Schibuya; K Kawasaki; S Asakawa; A Shintani; T Sasaki; K Nagamine; S Mitsuyama; S E Antonarakis; S Minoshima; N Shimizu; G Nordsiek; K Hornischer; P Brant; M Scharfe; O Schon; A Desario; J Reichelt; G Kauer; H Blocker; J Ramser; A Beck; S Klages; S Hennig; L Riesselmann; E Dagand; T Haaf; S Wehrmeyer; K Borzym; K Gardiner; D Nizetic; F Francis; H Lehrach; R Reinhardt; M L Yaspo
Journal:  Nature       Date:  2000-05-18       Impact factor: 49.962

2.  Gene ontology: tool for the unification of biology. The Gene Ontology Consortium.

Authors:  M Ashburner; C A Ball; J A Blake; D Botstein; H Butler; J M Cherry; A P Davis; K Dolinski; S S Dwight; J T Eppig; M A Harris; D P Hill; L Issel-Tarver; A Kasarskis; S Lewis; J C Matese; J E Richardson; M Ringwald; G M Rubin; G Sherlock
Journal:  Nat Genet       Date:  2000-05       Impact factor: 38.330

3.  Large-scale comparison of fungal sequence information: mechanisms of innovation in Neurospora crassa and gene loss in Saccharomyces cerevisiae.

Authors:  E L Braun; A L Halpern; M A Nelson; D O Natvig
Journal:  Genome Res       Date:  2000-04       Impact factor: 9.043

4.  Analysis of the genome sequence of the flowering plant Arabidopsis thaliana.

Authors: 
Journal:  Nature       Date:  2000-12-14       Impact factor: 49.962

5.  Active conservation of noncoding sequences revealed by three-way species comparisons.

Authors:  I Dubchak; M Brudno; G G Loots; L Pachter; C Mayor; E M Rubin; K A Frazer
Journal:  Genome Res       Date:  2000-09       Impact factor: 9.043

6.  Human and mouse gene structure: comparative analysis and application to exon prediction.

Authors:  S Batzoglou; L Pachter; J P Mesirov; B Berger; E S Lander
Journal:  Genome Res       Date:  2000-07       Impact factor: 9.043

7.  Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.

Authors:  J L Riechmann; J Heard; G Martin; L Reuber; C Jiang; J Keddie; L Adam; O Pineda; O J Ratcliffe; R R Samaha; R Creelman; M Pilgrim; P Broun; J Z Zhang; D Ghandehari; B K Sherman; G Yu
Journal:  Science       Date:  2000-12-15       Impact factor: 47.728

8.  Lineage-specific loss and divergence of functionally linked genes in eukaryotes.

Authors:  L Aravind; H Watanabe; D J Lipman; E V Koonin
Journal:  Proc Natl Acad Sci U S A       Date:  2000-10-10       Impact factor: 11.205

9.  Human-mouse genome comparisons to locate regulatory sites.

Authors:  W W Wasserman; M Palumbo; W Thompson; J W Fickett; C E Lawrence
Journal:  Nat Genet       Date:  2000-10       Impact factor: 38.330

Review 10.  A survey of human disease gene counterparts in the Drosophila genome.

Authors:  M E Fortini; M P Skupski; M S Boguski; I K Hariharan
Journal:  J Cell Biol       Date:  2000-07-24       Impact factor: 10.539

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  4 in total

1.  Excess non-synonymous substitutions suggest that positive selection episodes occurred during the evolution of DNA-binding domains in the Arabidopsis R2R3-MYB gene family.

Authors:  Li Jia; Michael T Clegg; Tao Jiang
Journal:  Plant Mol Biol       Date:  2003-06       Impact factor: 4.076

2.  Dntf-2r, a young Drosophila retroposed gene with specific male expression under positive Darwinian selection.

Authors:  Esther Betrán; Manyuan Long
Journal:  Genetics       Date:  2003-07       Impact factor: 4.562

3.  Evolutionary dynamics of the DNA-binding domains in putative R2R3-MYB genes identified from rice subspecies indica and japonica genomes.

Authors:  Li Jia; Michael T Clegg; Tao Jiang
Journal:  Plant Physiol       Date:  2004-02       Impact factor: 8.340

4.  Comparisons between Arabidopsis thaliana and Drosophila melanogaster in relation to Coding and Noncoding Sequence Length and Gene Expression.

Authors:  Rachel Caldwell; Yan-Xia Lin; Ren Zhang
Journal:  Int J Genomics       Date:  2015-05-31       Impact factor: 2.326

  4 in total

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