Literature DB >> 11159395

Mechanisms of permeation and selectivity in calcium channels.

B Corry1, T W Allen, S Kuyucak, S H Chung.   

Abstract

The mechanisms underlying ion transport and selectivity in calcium channels are examined using electrostatic calculations and Brownian dynamics simulations. We model the channel as a rigid structure with fixed charges in the walls, representing glutamate residues thought to be responsible for ion selectivity. Potential energy profiles obtained from multi-ion electrostatic calculations provide insights into ion permeation and many other observed features of L-type calcium channels. These qualitative explanations are confirmed by the results of Brownian dynamics simulations, which closely reproduce several experimental observations. These include the current-voltage curves, current-concentration relationship, block of monovalent currents by divalent ions, the anomalous mole fraction effect between sodium and calcium ions, attenuation of calcium current by external sodium ions, and the effects of mutating glutamate residues in the amino acid sequence.

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Year:  2001        PMID: 11159395      PMCID: PMC1301226          DOI: 10.1016/S0006-3495(01)76007-9

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  58 in total

1.  The cavity and pore helices in the KcsA K+ channel: electrostatic stabilization of monovalent cations.

Authors:  B Roux; R MacKinnon
Journal:  Science       Date:  1999-07-02       Impact factor: 47.728

2.  Tests of continuum theories as models of ion channels. II. Poisson-Nernst-Planck theory versus brownian dynamics.

Authors:  B Corry; S Kuyucak; S H Chung
Journal:  Biophys J       Date:  2000-05       Impact factor: 4.033

3.  The theory of ion transport through membrane channels.

Authors:  K Cooper; E Jakobsson; P Wolynes
Journal:  Prog Biophys Mol Biol       Date:  1985       Impact factor: 3.667

4.  Models of ion pores in N-type voltage-gated calcium channels.

Authors:  S W Doughty; F E Blaney; W G Richards
Journal:  J Mol Graph       Date:  1995-12

5.  Aspartate substitutions establish the concerted action of P-region glutamates in repeats I and III in forming the protonation site of L-type Ca2+ channels.

Authors:  X H Chen; R W Tsien
Journal:  J Biol Chem       Date:  1997-11-28       Impact factor: 5.157

6.  Ca2+ channel selectivity at a single locus for high-affinity Ca2+ interactions.

Authors:  P T Ellinor; J Yang; W A Sather; J F Zhang; R W Tsien
Journal:  Neuron       Date:  1995-11       Impact factor: 17.173

7.  Mechanism of ion permeation through calcium channels.

Authors:  P Hess; R W Tsien
Journal:  Nature       Date:  1984 May 31-Jun 6       Impact factor: 49.962

8.  Calcium channel selectivity for divalent and monovalent cations. Voltage and concentration dependence of single channel current in ventricular heart cells.

Authors:  P Hess; J B Lansman; R W Tsien
Journal:  J Gen Physiol       Date:  1986-09       Impact factor: 4.086

Review 9.  Ionic hopping defended.

Authors:  C Miller
Journal:  J Gen Physiol       Date:  1999-06       Impact factor: 4.086

Review 10.  Calcium channel permeation: A field in flux.

Authors:  E W McCleskey
Journal:  J Gen Physiol       Date:  1999-06       Impact factor: 4.086

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  53 in total

1.  Conducting-state properties of the KcsA potassium channel from molecular and Brownian dynamics simulations.

Authors:  Shin-Ho Chung; Toby W Allen; Serdar Kuyucak
Journal:  Biophys J       Date:  2002-02       Impact factor: 4.033

2.  Model channel ion currents in NaCl-extended simple point charge water solution with applied-field molecular dynamics.

Authors:  P S Crozier; D Henderson; R L Rowley; D D Busath
Journal:  Biophys J       Date:  2001-12       Impact factor: 4.033

3.  Reservoir boundaries in Brownian dynamics simulations of ion channels.

Authors:  Ben Corry; Matthew Hoyles; Toby W Allen; Michael Walker; Serdar Kuyucak; Shin-Ho Chung
Journal:  Biophys J       Date:  2002-04       Impact factor: 4.033

4.  Functional properties of threefold and fourfold channels in ferritin deduced from electrostatic calculations.

Authors:  Takuya Takahashi; Serdar Kuyucak
Journal:  Biophys J       Date:  2003-04       Impact factor: 4.033

5.  Role of the dielectric constants of membrane proteins and channel water in ion permeation.

Authors:  Turgut Baştuğ; Serdar Kuyucak
Journal:  Biophys J       Date:  2003-05       Impact factor: 4.033

6.  Modeling diverse range of potassium channels with Brownian dynamics.

Authors:  Shin-Ho Chung; Toby W Allen; Serdar Kuyucak
Journal:  Biophys J       Date:  2002-07       Impact factor: 4.033

7.  The role of the dielectric barrier in narrow biological channels: a novel composite approach to modeling single-channel currents.

Authors:  Artem B Mamonov; Rob D Coalson; Abraham Nitzan; Maria G Kurnikova
Journal:  Biophys J       Date:  2003-06       Impact factor: 4.033

8.  Dielectric self-energy in Poisson-Boltzmann and Poisson-Nernst-Planck models of ion channels.

Authors:  Ben Corry; Serdar Kuyucak; Shin-Ho Chung
Journal:  Biophys J       Date:  2003-06       Impact factor: 4.033

9.  Conduction mechanisms of chloride ions in ClC-type channels.

Authors:  Ben Corry; Megan O'Mara; Shin-Ho Chung
Journal:  Biophys J       Date:  2004-02       Impact factor: 4.033

10.  Improved 3D continuum calculations of ion flux through membrane channels.

Authors:  Assen Koumanov; Ulrich Zachariae; Harald Engelhardt; Andrey Karshikoff
Journal:  Eur Biophys J       Date:  2003-07-18       Impact factor: 1.733

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