Literature DB >> 11159336

A simple probabilistic scoring method for protein domain identification.

J Murvai1, K Vlahovicek, S Pongor.   

Abstract

SUMMARY: A simple heuristic scoring method is described for assigning sequences to known domain types based on BLAST search outputs. The scoring is based on the score distribution of the known domain groups determined from a database versus database comparison and is directly applicable to BLAST output processing.

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Substances：

Year:  2000        PMID： 11159336     DOI： 10.1093/bioinformatics/16.12.1155

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  6 in total

1.  The SBASE protein domain library, release 8.0: a collection of annotated protein sequence segments.

Authors:  J Murvai; K Vlahovicek; E Barta; S Pongor
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

2.  The SBASE protein domain library, release 9.0: an online resource for protein domain identification.

Authors:  Kristian Vlahovicek; János Murvai; Endre Barta; Sándor Pongor
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

3.  Prediction of protein functional domains from sequences using artificial neural networks.

Authors:  J Murvai; K Vlahovicek; C Szepesvári; S Pongor
Journal:  Genome Res       Date:  2001-08       Impact factor: 9.043

4.  The SBASE domain sequence library, release 10: domain architecture prediction.

Authors:  Kristian Vlahovicek; Laszló Kaján; János Murvai; Zoltán Hegedus; Sándor Pongor
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

5.  The SBASE domain sequence resource, release 12: prediction of protein domain-architecture using support vector machines.

Authors:  Kristian Vlahovicek; László Kaján; Vilmos Agoston; Sándor Pongor
Journal:  Nucleic Acids Res       Date:  2005-01-01       Impact factor: 16.971

6.  Novel approach for selecting the best predictor for identifying the binding sites in DNA binding proteins.

Authors:  R Nagarajan; Shandar Ahmad; M Michael Gromiha
Journal:  Nucleic Acids Res       Date:  2013-06-20       Impact factor: 16.971
  6 in total

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