Literature DB >> 11158547

A highly variable segment of human subterminal 16p reveals a history of population growth for modern humans outstide Africa.

S Alonso, J A Armour.   

Abstract

We have sequenced a highly polymorphic subterminal noncoding region from human chromosome 16p13.3 flanking the 5' end of the hypervariable minisatellite MS205, in 100 chromosomes sampled from different African and Euroasiatic populations. Coalescence analysis indicates that the time to the most recent common ancestor (approximately 1 million years) predates the appearance of anatomically modern human forms. The root of the network describing this variability lies in Africa. African populations show a greater level of diversity and deeper branches. Most Euroasiatic variability seems to have been generated after a recent out-of-Africa range expansion. A history of population growth is the most likely scenario for the Euroasiatic populations. This pattern of nuclear variability can be reconciled with inferences based on mitochondrial DNA.

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Year:  2001        PMID: 11158547      PMCID: PMC14675          DOI: 10.1073/pnas.98.3.864

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  38 in total

1.  Recent common ancestry of human Y chromosomes: evidence from DNA sequence data.

Authors:  R Thomson; J K Pritchard; P Shen; P J Oefner; M W Feldman
Journal:  Proc Natl Acad Sci U S A       Date:  2000-06-20       Impact factor: 11.205

2.  Population genetic implications from sequence variation in four Y chromosome genes.

Authors:  P Shen; F Wang; P A Underhill; C Franco; W H Yang; A Roxas; R Sung; A A Lin; R W Hyman; D Vollrath; R W Davis; L L Cavalli-Sforza; P J Oefner
Journal:  Proc Natl Acad Sci U S A       Date:  2000-06-20       Impact factor: 11.205

3.  Integrated analysis of sequence evolution and population history using hypervariable compound haplotypes.

Authors:  E J Rogers; A C Shone; S Alonso; C A May; J A Armour
Journal:  Hum Mol Genet       Date:  2000-11-01       Impact factor: 6.150

4.  When did the human population size start increasing?

Authors:  J D Wall; M Przeworski
Journal:  Genetics       Date:  2000-08       Impact factor: 4.562

5.  Estimate of the mutation rate per nucleotide in humans.

Authors:  M W Nachman; S L Crowell
Journal:  Genetics       Date:  2000-09       Impact factor: 4.562

6.  Pairwise comparisons of mitochondrial DNA sequences in stable and exponentially growing populations.

Authors:  M Slatkin; R R Hudson
Journal:  Genetics       Date:  1991-10       Impact factor: 4.562

7.  Statistical method for testing the neutral mutation hypothesis by DNA polymorphism.

Authors:  F Tajima
Journal:  Genetics       Date:  1989-11       Impact factor: 4.562

8.  Analysis of any point mutation in DNA. The amplification refractory mutation system (ARMS).

Authors:  C R Newton; A Graham; L E Heptinstall; S J Powell; C Summers; N Kalsheker; J C Smith; A F Markham
Journal:  Nucleic Acids Res       Date:  1989-04-11       Impact factor: 16.971

9.  Statistical properties of the number of recombination events in the history of a sample of DNA sequences.

Authors:  R R Hudson; N L Kaplan
Journal:  Genetics       Date:  1985-09       Impact factor: 4.562

Review 10.  Genetic perspectives on human origins and differentiation.

Authors:  H Harpending; A Rogers
Journal:  Annu Rev Genomics Hum Genet       Date:  2000       Impact factor: 8.929

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  16 in total

Review 1.  Order emerging from chaos in human evolutionary genetics.

Authors:  A R Rogers
Journal:  Proc Natl Acad Sci U S A       Date:  2001-01-30       Impact factor: 11.205

2.  Structural analysis of insulin minisatellite alleles reveals unusually large differences in diversity between Africans and non-Africans.

Authors:  John D H Stead; Alec J Jeffreys
Journal:  Am J Hum Genet       Date:  2002-10-28       Impact factor: 11.025

3.  The impact of sampling schemes on the site frequency spectrum in nonequilibrium subdivided populations.

Authors:  Thomas Städler; Bernhard Haubold; Carlos Merino; Wolfgang Stephan; Peter Pfaffelhuber
Journal:  Genetics       Date:  2009-02-23       Impact factor: 4.562

4.  Bayesian coalescent inference of major human mitochondrial DNA haplogroup expansions in Africa.

Authors:  Quentin D Atkinson; Russell D Gray; Alexei J Drummond
Journal:  Proc Biol Sci       Date:  2009-01-22       Impact factor: 5.349

5.  Deep haplotype divergence and long-range linkage disequilibrium at xp21.1 provide evidence that humans descend from a structured ancestral population.

Authors:  Daniel Garrigan; Zahra Mobasher; Sarah B Kingan; Jason A Wilder; Michael F Hammer
Journal:  Genetics       Date:  2005-06-03       Impact factor: 4.562

6.  Human population structure and its effects on sampling Y chromosome sequence variation.

Authors:  Michael F Hammer; Felisa Blackmer; Dan Garrigan; Michael W Nachman; Jason A Wilder
Journal:  Genetics       Date:  2003-08       Impact factor: 4.562

7.  A recent shift from polygyny to monogamy in humans is suggested by the analysis of worldwide Y-chromosome diversity.

Authors:  Isabelle Dupanloup; Luisa Pereira; Giorgio Bertorelle; Francesc Calafell; Maria João Prata; Antonio Amorim; Guido Barbujani
Journal:  J Mol Evol       Date:  2003-07       Impact factor: 2.395

8.  Chinese strains (Type 7) of JC virus are afro-asiatic in origin but are phylogenetically distinct from the Mongolian and Indian strains (Type 2D) and the Korean and Japanese strains (Type 2A).

Authors:  Xiaohong Cui; Jian C Wang; Alison Deckhut; Bindu C Joseph; Philipp Eberwein; Christopher L Cubitt; Caroline F Ryschkewitsch; Hansjurgen T Agostini; Gerald L Stoner
Journal:  J Mol Evol       Date:  2004-05       Impact factor: 2.395

9.  DNA sequence variation in a 3.7-kb noncoding sequence 5' of the CYP1A2 gene: implications for human population history and natural selection.

Authors:  S P Wooding; W S Watkins; M J Bamshad; D M Dunn; R B Weiss; L B Jorde
Journal:  Am J Hum Genet       Date:  2002-08-09       Impact factor: 11.025

10.  Nucleotide variability at G6pd and the signature of malarial selection in humans.

Authors:  Matthew A Saunders; Michael F Hammer; Michael W Nachman
Journal:  Genetics       Date:  2002-12       Impact factor: 4.562

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