Literature DB >> 11134046

On the enzymatic activation of NADH.

R Meijers1, R J Morris, H W Adolph, A Merli, V S Lamzin, E S Cedergren-Zeppezauer.   

Abstract

Atomic (1 A) resolution x-ray structures of horse liver alcohol dehydrogenase in complex with NADH revealed the formation of an adduct in the active site between a metal-bound water and NADH. Furthermore, a pronounced distortion of the pyridine ring of NADH was observed. A series of quantum chemical calculations on the water-nicotinamide adduct showed that the puckering of the pyridine ring in the crystal structures can only be reproduced when the water is considered a hydroxide ion. These observations provide fundamental insight into the enzymatic activation of NADH for hydride transfer.

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Year:  2000        PMID: 11134046     DOI: 10.1074/jbc.M010870200

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  28 in total

1.  Structures of F420H2:NADP+ oxidoreductase with and without its substrates bound.

Authors:  E Warkentin; B Mamat; M Sordel-Klippert; M Wicke; R K Thauer; M Iwata; S Iwata; U Ermler; S Shima
Journal:  EMBO J       Date:  2001-12-03       Impact factor: 11.598

2.  The conserved Glu-60 residue in Thermoanaerobacter brockii alcohol dehydrogenase is not essential for catalysis.

Authors:  Oded Kleifeld; Shu Ping Shi; Raz Zarivach; Miriam Eisenstein; Irit Sagi
Journal:  Protein Sci       Date:  2003-03       Impact factor: 6.725

3.  Atomic-resolution structures of horse liver alcohol dehydrogenase with NAD(+) and fluoroalcohols define strained Michaelis complexes.

Authors:  Bryce V Plapp; S Ramaswamy
Journal:  Biochemistry       Date:  2012-05-01       Impact factor: 3.162

4.  Crystallization and preliminary X-ray diffraction studies of an alcohol dehydrogenase from the Antarctic psychrophile Moraxella sp. TAE123.

Authors:  Yannis Papanikolau; Iason Tsigos; Maria Papadovasilaki; Vassilis Bouriotis; Kyriacos Petratos
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2005-02-01

5.  The Medium-Chain Dehydrogenase/reductase Engineering Database: a systematic analysis of a diverse protein family to understand sequence-structure-function relationship.

Authors:  Michael Knoll; Jürgen Pleiss
Journal:  Protein Sci       Date:  2008-07-09       Impact factor: 6.725

6.  Structural and functional characterization of BaiA, an enzyme involved in secondary bile acid synthesis in human gut microbe.

Authors:  Shiva Bhowmik; David H Jones; Hsien-Po Chiu; In-Hee Park; Hsiu-Ju Chiu; Herbert L Axelrod; Carol L Farr; Henry J Tien; Sanjay Agarwalla; Scott A Lesley
Journal:  Proteins       Date:  2013-10-17

7.  S-adenosyl-L-homocysteine hydrolase from a hyperthermophile (Thermotoga maritima) is expressed in Escherichia coli in inactive form - Biochemical and structural studies.

Authors:  Krzysztof Brzezinski; Justyna Czyrko; Joanna Sliwiak; Edyta Nalewajko-Sieliwoniuk; Mariusz Jaskolski; Boguslaw Nocek; Zbigniew Dauter
Journal:  Int J Biol Macromol       Date:  2017-06-16       Impact factor: 6.953

8.  Differential binding of NAD+ and NADH allows the transcriptional corepressor carboxyl-terminal binding protein to serve as a metabolic sensor.

Authors:  Clark C Fjeld; William T Birdsong; Richard H Goodman
Journal:  Proc Natl Acad Sci U S A       Date:  2003-07-18       Impact factor: 11.205

9.  Aldose reductase-catalyzed reduction of aldehyde phospholipids.

Authors:  Sanjay Srivastava; Matthew Spite; John O Trent; Matthew B West; Yonis Ahmed; Aruni Bhatnagar
Journal:  J Biol Chem       Date:  2004-10-01       Impact factor: 5.157

10.  First principle calculations of (113)Cd chemical shifts for proteins and model systems.

Authors:  Lars Hemmingsen; Lars Olsen; Jens Antony; Stephan P A Sauer
Journal:  J Biol Inorg Chem       Date:  2004-06-19       Impact factor: 3.358

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