Literature DB >> 11129629

Population structure and genetic diversity within California Citrus tristeza virus (CTV) isolates.

P Kong1, L Rubio, M Polek, B W Falk.   

Abstract

The Closterovirus, Citrus tristeza virus (CTV) is an aphid-borne RNA virus that is the causal agent of important worldwide economic losses in citrus. Biological and molecular variation has been observed for many CTV isolates. In this work we detected and analyzed sequence variants (haplotypes) within individual CTV isolates. We studied the population structure of five California CTV isolates by single strand conformation polymorphism (SSCP) analysis of four CTV genomic regions. Also, we estimated the genetic diversity within and between isolates by analysis of haplotype nucleotide sequences. Most CTV isolates were composed of a population of genetically related variants (haplotypes), one being predominant. However in one case, we found a high nucleotide divergence between haplotypes of the same isolate. Comparison of these haplotypes with those from other isolates suggests that some CTV isolates could have arisen as result of a mixed infection of two divergent isolates.

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Year:  2000        PMID： 11129629     DOI： 10.1023/a:1008198311398

Source DB:  PubMed          Journal:  Virus Genes        ISSN： 0920-8569            Impact factor:   2.332


  17 in total

1.  Contribution of Taq polymerase-induced errors to the estimation of RNA virus diversity.

Authors:  M A Bracho; A Moya; E Barrio
Journal:  J Gen Virol       Date:  1998-12       Impact factor: 3.891

2.  Molecular characterization of an isolate of citrus tristeza virus that causes severe symptoms in sweet orange.

Authors:  Z N Yang; D M Mathews; J A Dodds; T E Mirkov
Journal:  Virus Genes       Date:  1999       Impact factor: 2.332

3.  The complete genome sequence of the major component of a mild citrus tristeza virus isolate.

Authors:  M C Vives; L Rubio; C L Pez; J Navas-Castillo; M R Albiach-Mart; W O Dawson; J Guerri; R Flores; P Moreno
Journal:  J Gen Virol       Date:  1999-03       Impact factor: 3.891

4.  Comparative sequence analysis of the coat proteins of biologically distinct citrus tristeza closterovirus isolates.

Authors:  H Pappu; S Pappu; C Niblett; R Lee; E Civerolo
Journal:  Virus Genes       Date:  1993-09       Impact factor: 2.332

5.  Nucleotide sequence and organization of eight 3' open reading frames of the citrus tristeza closterovirus genome.

Authors:  H R Pappu; A V Karasev; E J Anderson; S S Pappu; M E Hilf; V J Febres; R M Eckloff; M McCaffery; V Boyko; S Gowda
Journal:  Virology       Date:  1994-02-15       Impact factor: 3.616

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Journal:  Anal Biochem       Date:  1982-11-01       Impact factor: 3.365

7.  A comprehensive set of sequence analysis programs for the VAX.

Authors:  J Devereux; P Haeberli; O Smithies
Journal:  Nucleic Acids Res       Date:  1984-01-11       Impact factor: 16.971

Review 8.  Rapid evolution of RNA genomes.

Authors:  J Holland; K Spindler; F Horodyski; E Grabau; S Nichol; S VandePol
Journal:  Science       Date:  1982-03-26       Impact factor: 47.728

9.  Unusual sequence relationships between two isolates of citrus tristeza virus.

Authors:  M Mawassi; E Mietkiewska; R Gofman; G Yang; M Bar-Joseph
Journal:  J Gen Virol       Date:  1996-09       Impact factor: 3.891

10.  Molecular variability of the 5'- and 3'-terminal regions of citrus tristeza virus RNA.

Authors:  C López; M A Ayllón; J Navas-Castillo; J Guerri; P Moreno; R Flores
Journal:  Phytopathology       Date:  1998-07       Impact factor: 4.025
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  20 in total

1.  Structure and temporal dynamics of populations within wheat streak mosaic virus isolates.

Authors:  J S Hall; R French; T J Morris; D C Stenger
Journal:  J Virol       Date:  2001-11       Impact factor: 5.103

2.  Population structure of Citrus tristeza virus from field Argentinean isolates.

Authors:  Néstor G Iglesias; Selma P Gago-Zachert; Germán Robledo; Norma Costa; María Inés Plata; Osmar Vera; Oscar Grau; Liliana C Semorile
Journal:  Virus Genes       Date:  2007-11-13       Impact factor: 2.332

3.  Populations of genomic RNAs devoted to the replication or spread of a bipartite plant virus differ in genetic structure.

Authors:  Gloria Lozano; Ana Grande-Pérez; Jesús Navas-Castillo
Journal:  J Virol       Date:  2009-09-30       Impact factor: 5.103

4.  Superinfection exclusion is an active virus-controlled function that requires a specific viral protein.

Authors:  Svetlana Y Folimonova
Journal:  J Virol       Date:  2012-03-07       Impact factor: 5.103

5.  Genetic variation of Citrus tristeza virus isolates from California and Spain: evidence for mixed infections and recombination.

Authors:  L Rubio; M A Ayllón; P Kong; A Fernández; M Polek; J Guerri; P Moreno; B W Falk
Journal:  J Virol       Date:  2001-09       Impact factor: 5.103

6.  Variations in two gene sequences of Citrus tristeza virus after host passage.

Authors:  María A Ayllón; Luis Rubio; Vicente Sentandreu; Andrés Moya; José Guerri; Pedro Moreno
Journal:  Virus Genes       Date:  2006-04       Impact factor: 2.332

7.  Infection with strains of Citrus tristeza virus does not exclude superinfection by other strains of the virus.

Authors:  Svetlana Y Folimonova; Cecile J Robertson; Turksen Shilts; Alexey S Folimonov; Mark E Hilf; Stephen M Garnsey; William O Dawson
Journal:  J Virol       Date:  2009-11-18       Impact factor: 5.103

8.  Characterization of Citrus tristeza virus strains from southern China based on analysis of restriction patterns and sequences of their coat protein genes.

Authors:  Bo Jiang; Ni Hong; Guo-Ping Wang; John Hu; Jian-Kun Zhang; Cai-Xia Wang; Yong Liu; Xu-Dong Fan
Journal:  Virus Genes       Date:  2008-07-15       Impact factor: 2.332

9.  Stem pitting and seedling yellows symptoms of Citrus tristeza virus infection may be determined by minor sequence variants.

Authors:  Silvija Cerni; Jelena Ruscić; Gustavo Nolasco; Zivko Gatin; Mladen Krajacić; Dijana Skorić
Journal:  Virus Genes       Date:  2007-12-12       Impact factor: 2.332

10.  Relative quantitation of virus population size in mixed genotype infections using sequencing chromatograms.

Authors:  Gerod S Hall; Damon P Little
Journal:  J Virol Methods       Date:  2007-07-19       Impact factor: 2.014
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