Literature DB >> 11106485

Structural origins of the interfacial activation in Thermomyces (Humicola) lanuginosa lipase.

A M Brzozowski1, H Savage, C S Verma, J P Turkenburg, D M Lawson, A Svendsen, S Patkar.   

Abstract

The already known X-ray structures of lipases provide little evidence about initial, discrete structural steps occurring in the first phases of their activation in the presence of lipids (process referred to as interfacial activation). To address this problem, five new Thermomyces (formerly Humicola) lanuginosa lipase (TlL) crystal structures have been solved and compared with four previously reported structures of this enzyme. The bias coming from different crystallization media has been minimized by the growth of all crystals under the same crystallization conditions, in the presence of detergent/lipid analogues, with low or high ionic strength as the only main variable. Resulting structures and their characteristic features allowed the identification of three structurally distinct species of this enzyme: low activity form (LA), activated form (A), and fully Active (FA) form. The isomerization of the Cys268-Cys22 disulfide, synchronized with the formation of a new, short alpha(0) helix and flipping of the Arg84 (Arginine switch) located in the lid's proximal hinge, have been postulated as the key, structural factors of the initial transitions between LA and A forms. The experimental results were supplemented by theoretical calculations. The magnitude of the activation barrier between LA (ground state) and A (end state) forms of TlL (10.6 kcal/mol) is comparable to the enthalpic barriers typical for ring flips and disulfide isomerizations at ambient temperatures. This suggests that the sequence of the structural changes, as exemplified in various TlL crystal structures, mirror those that may occur during interfacial activation.

Entities:  

Mesh:

Substances:

Year:  2000        PMID: 11106485     DOI: 10.1021/bi0013905

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  32 in total

1.  Orientation and conformation of a lipase at an interface studied by molecular dynamics simulations.

Authors:  Morten Ø Jensen; Torben R Jensen; Kristian Kjaer; Thomas Bjørnholm; Ole G Mouritsen; Günther H Peters
Journal:  Biophys J       Date:  2002-07       Impact factor: 4.033

2.  The application of PCR for the isolation of a lipase gene from the genomic DNA of an Antarctic microfungus.

Authors:  J Ron Bradner; Philip J L Bell; V S Junior Te'o; K M Helena Nevalainen
Journal:  Curr Genet       Date:  2003-09-17       Impact factor: 3.886

3.  Solvent-induced lid opening in lipases: a molecular dynamics study.

Authors:  Sascha Rehm; Peter Trodler; Jürgen Pleiss
Journal:  Protein Sci       Date:  2010-11       Impact factor: 6.725

Review 4.  Effects of surfactants on lipase structure, activity, and inhibition.

Authors:  Vincent Delorme; Rabeb Dhouib; Stéphane Canaan; Frédéric Fotiadu; Frédéric Carrière; Jean-François Cavalier
Journal:  Pharm Res       Date:  2011-01-14       Impact factor: 4.200

5.  Crystal structure of a secreted lipase from Gibberella zeae reveals a novel "double-lock" mechanism.

Authors:  Zhiyong Lou; Ming Li; Yuna Sun; Ye Liu; Zheng Liu; Wenping Wu; Zihe Rao
Journal:  Protein Cell       Date:  2010-08-28       Impact factor: 14.870

6.  Lipid-binding proteins: structure of the phospholipid ligands.

Authors:  Derek Marsh
Journal:  Protein Sci       Date:  2003-09       Impact factor: 6.725

7.  High-efficiency expression of the thermophilic lipase from Geobacillus thermocatenulatus in Escherichia coli and its application in the enzymatic hydrolysis of rapeseed oil.

Authors:  Jun Zhang; Miao Tian; Pengmei Lv; Wen Luo; Zhiyuan Wang; Jingliang Xu; Zhongming Wang
Journal:  3 Biotech       Date:  2020-11-10       Impact factor: 2.406

8.  Crystallization and preliminary crystallographic analysis of Gibberella zeae extracellular lipase.

Authors:  Yuna Sun; Ming Li; Yan Zhang; Lifang Liu; Ye Liu; Zheng Liu; Xumei Li; Zhiyong Lou
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2008-08-20

9.  Fluorescence spectroscopic analysis of the structure and dynamics of Bacillus subtilis lipase A governing its activity profile under alkaline conditions.

Authors:  Daniel Kübler; Kim N Ingenbosch; Anna Bergmann; Monika Weidmann; Kerstin Hoffmann-Jacobsen
Journal:  Eur Biophys J       Date:  2015-07-30       Impact factor: 1.733

10.  Modeling of solvent-dependent conformational transitions in Burkholderia cepacia lipase.

Authors:  Peter Trodler; Rolf D Schmid; Jürgen Pleiss
Journal:  BMC Struct Biol       Date:  2009-05-28
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.