Literature DB >> 11104000

Integrative database analysis in structural genomics.

M Gerstein1.   

Abstract

An important aspect of structural genomics is connecting coordinate data with whole-genome information related to phylogenetic occurrence, protein function, gene expression, and protein-protein interactions. Integrative database analysis allows one to survey the 'finite parts list' of protein folds from many perspectives, highlighting certain folds and structural features that stand out in particular ways.

Mesh：

Substances：

Year:  2000        PMID： 11104000     DOI： 10.1038/80739

Source DB:  PubMed          Journal:  Nat Struct Biol        ISSN： 1072-8368


  15 in total

1.  A metadata framework for interoperating heterogeneous genome data using XML.

Authors:  K H Cheung; A M Deshpande; N Tosches; S Nath; A Agrawal; P Miller; A Kumar; M Snyder
Journal:  Proc AMIA Symp       Date:  2001

2.  YMD: a microarray database for large-scale gene expression analysis.

Authors:  Kei-Hoi Cheung; Kevin White; Janet Hager; Mark Gerstein; Valerie Reinke; Kenneth Nelson; Peter Masiar; Ranjana Srivastava; Yuli Li; Ju Li; Hongyu Zhao; Jinming Li; David B Allison; Michael Snyder; Perry Miller; Kenneth Williams
Journal:  Proc AMIA Symp       Date:  2002

3.  Expression screening, protein purification and NMR analysis of human protein domains for structural genomics.

Authors:  G E Folkers; B N M van Buuren; R Kaptein
Journal:  J Struct Funct Genomics       Date:  2004

4.  Mapping structural interactions using in-cell NMR spectroscopy (STINT-NMR).

Authors:  David S Burz; Kaushik Dutta; David Cowburn; Alexander Shekhtman
Journal:  Nat Methods       Date:  2006-02       Impact factor: 28.547

5.  The STINT-NMR method for studying in-cell protein-protein interactions.

Authors:  David S Burz; Alexander Shekhtman
Journal:  Curr Protoc Protein Sci       Date:  2010-08

6.  Linear-time protein 3-D structure searching with insertions and deletions.

Authors:  Tetsuo Shibuya; Jesper Jansson; Kunihiko Sadakane
Journal:  Algorithms Mol Biol       Date:  2010-01-04       Impact factor: 1.405

7.  The dominance of the population by a selected few: power-law behaviour applies to a wide variety of genomic properties.

Authors:  Nicholas M Luscombe; Jiang Qian; Zhaolei Zhang; Ted Johnson; Mark Gerstein
Journal:  Genome Biol       Date:  2002-07-25       Impact factor: 13.583

Review 8.  Comparative genomics of Archaea: how much have we learned in six years, and what's next?

Authors:  Kira S Makarova; Eugene V Koonin
Journal:  Genome Biol       Date:  2003-07-16       Impact factor: 13.583

9.  A comprehensive evolutionary classification of proteins encoded in complete eukaryotic genomes.

Authors:  Eugene V Koonin; Natalie D Fedorova; John D Jackson; Aviva R Jacobs; Dmitri M Krylov; Kira S Makarova; Raja Mazumder; Sergei L Mekhedov; Anastasia N Nikolskaya; B Sridhar Rao; Igor B Rogozin; Sergei Smirnov; Alexander V Sorokin; Alexander V Sverdlov; Sona Vasudevan; Yuri I Wolf; Jodie J Yin; Darren A Natale
Journal:  Genome Biol       Date:  2004-01-15       Impact factor: 13.583

10.  Sequencing of bacterial genomes: principles and insights into pathogenesis and development of antibiotics.

Authors:  Eric S Donkor
Journal:  Genes (Basel)       Date:  2013-10-14       Impact factor: 4.096
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