Literature DB >> 11088738

Electrostatic interaction between long, rigid helical macromolecules at all interaxial angles.

A A Kornyshev1, S Leikin.   

Abstract

We derive formulas for the electrostatic interaction between two long, rigid macromolecules that may have arbitrary surface charge patterns and cross at an arbitrary interaxial angle. We calculate the dependence of the interaction energy on the interaxial angle, on the separation, and on the precise alignment of the charge pattern on one molecule with respect to the other. We focus in particular on molecules with helical charge patterns. We report an exact, explicit expression for the energy of interaction between net-neutral helices in a nonpolar medium as well as an approximate result for charged helices immersed in an electrolyte solution. The latter result becomes exact in the asymptotic limit of large separations. Molecular chirality of helices manifests itself in a torque that tends to twist helices in a certain direction out of parallel alignment and that has a nontrivial behavior at small interaxial angles. We illustrate the theory with the calculation of the torque between layers of idealized, DNA-like double helices in cholesteric aggregates. We propose a mechanism of the observed cholesteric-to-columnar phase transition and suggest an explanation for the observed macroscopic (0.4-5 microm) pitch of the cholesteric phase of B-DNA.

Mesh:

Substances:

Year:  2000        PMID: 11088738     DOI: 10.1103/physreve.62.2576

Source DB:  PubMed          Journal:  Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics        ISSN: 1063-651X


  12 in total

1.  Right-handed double-helix ultrashort DNA yields chiral nematic phases with both right- and left-handed director twist.

Authors:  Giuliano Zanchetta; Fabio Giavazzi; Michi Nakata; Marco Buscaglia; Roberto Cerbino; Noel A Clark; Tommaso Bellini
Journal:  Proc Natl Acad Sci U S A       Date:  2010-09-27       Impact factor: 11.205

2.  Statistical mechanics of columnar DNA assemblies.

Authors:  A Wynveen; D J Lee; A A Kornyshev
Journal:  Eur Phys J E Soft Matter       Date:  2005-03       Impact factor: 1.890

3.  DNA cholesteric pitch as a function of density and ionic strength.

Authors:  Christopher B Stanley; Helen Hong; Helmut H Strey
Journal:  Biophys J       Date:  2005-07-22       Impact factor: 4.033

4.  Correlation effects, image charge effects and finite size in the macro-ion-electrolyte system: a field-theoretic approach.

Authors:  D J Lee
Journal:  Eur Phys J E Soft Matter       Date:  2009-05-01       Impact factor: 1.890

5.  Electrostatic braiding and homologous pairing of DNA double helices.

Authors:  Ruggero Cortini; Alexei A Kornyshev; Dominic J Lee; Sergey Leikin
Journal:  Biophys J       Date:  2011-08-17       Impact factor: 4.033

6.  Divalent Ion-Mediated DNA-DNA Interactions: A Comparative Study of Triplex and Duplex.

Authors:  Zhong-Liang Zhang; Yuan-Yan Wu; Kun Xi; Jian-Ping Sang; Zhi-Jie Tan
Journal:  Biophys J       Date:  2017-08-08       Impact factor: 4.033

7.  Undulations enhance the effect of helical structure on DNA interactions.

Authors:  D J Lee; A Wynveen; A A Kornyshev; S Leikin
Journal:  J Phys Chem B       Date:  2010-09-09       Impact factor: 2.991

8.  Multivalent ion-mediated nucleic acid helix-helix interactions: RNA versus DNA.

Authors:  Yuan-Yan Wu; Zhong-Liang Zhang; Jin-Si Zhang; Xiao-Long Zhu; Zhi-Jie Tan
Journal:  Nucleic Acids Res       Date:  2015-05-27       Impact factor: 16.971

9.  A geometrical model for DNA organization in bacteria.

Authors:  Mathias Buenemann; Peter Lenz
Journal:  PLoS One       Date:  2010-11-03       Impact factor: 3.240

10.  Nucleosome-induced homology recognition in chromatin.

Authors:  Jonathan G Hedley; Vladimir B Teif; Alexei A Kornyshev
Journal:  J R Soc Interface       Date:  2021-06-16       Impact factor: 4.293

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.