Literature DB >> 11088494

Hydrogen-bond dynamics for the extended simple point-charge model of water

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Abstract

We study hydrogen-bond dynamics in liquid water at low temperatures using molecular dynamics simulations. We analyze the dynamics using energetic and geometric definitions of a hydrogen bond, and employ two analysis methods: (i) a history-dependent correlation function, related to the distribution of bond lifetimes, and (ii) a history-independent correlation function. For method (i) we find an approximately Arrhenius temperature dependence of the bond lifetime, and find that the distribution of bond lifetimes is extremely sensitive to the choice of bond definition. For method (ii) we find-independent of bond definition-that the dynamics are consistent with the predictions of the mode-coupling theory, suggesting that the slow dynamics of hydrogen bonds can be explained in the same framework as standard transport quantities. Our results allow us to clarify the significance of the choice of both bond definition and analysis technique.

Entities:  

Year:  2000        PMID: 11088494     DOI: 10.1103/physreve.62.579

Source DB:  PubMed          Journal:  Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics        ISSN: 1063-651X


  14 in total

1.  Properties of water along the liquid-vapor coexistence curve via molecular dynamics simulations using the polarizable TIP4P-QDP-LJ water model.

Authors:  Brad A Bauer; Sandeep Patel
Journal:  J Chem Phys       Date:  2009-08-28       Impact factor: 3.488

2.  Bond lifetime and diffusion coefficient in colloids with short-range interactions.

Authors:  E Ndong Mintsa; Ph Germain; S Amokrane
Journal:  Eur Phys J E Soft Matter       Date:  2015-03-30       Impact factor: 1.890

3.  Anomalous surface diffusion of protons on lipid membranes.

Authors:  Maarten G Wolf; Helmut Grubmüller; Gerrit Groenhof
Journal:  Biophys J       Date:  2014-07-01       Impact factor: 4.033

4.  Electrostatic contribution from solvent in modulating single-walled carbon nanotube association.

Authors:  Shu-Ching Ou; Sandeep Patel
Journal:  J Chem Phys       Date:  2014-09-21       Impact factor: 3.488

5.  Characterization of the structures and dynamics of phosphoric acid doped benzimidazole mixtures: a molecular dynamics study.

Authors:  Minal More; Swagata Pahari; Sudip Roy; Arun Venkatnathan
Journal:  J Mol Model       Date:  2012-07-22       Impact factor: 1.810

6.  Theoretical study of HOCl-catalyzed keto-enol tautomerization of β-cyclopentanedione in an explicit water environment.

Authors:  Cassian D'Cunha; Alexander N Morozov; David C Chatfield
Journal:  J Phys Chem A       Date:  2013-08-22       Impact factor: 2.781

7.  Antifouling glycocalyx-mimetic peptoids.

Authors:  Hyun Ok Ham; Sung Hyun Park; Josh W Kurutz; Igal G Szleifer; Phillip B Messersmith
Journal:  J Am Chem Soc       Date:  2013-08-21       Impact factor: 15.419

8.  Incorporating Phase-Dependent Polarizability in Non-Additive Electrostatic Models for Molecular Dynamics Simulations of the Aqueous Liquid-Vapor Interface.

Authors:  Brad A Bauer; G Lee Warren; Sandeep Patel
Journal:  J Chem Theory Comput       Date:  2009-01-08       Impact factor: 6.006

9.  Potential of mean force of association of large hydrophobic particles: toward the nanoscale limit.

Authors:  Mariusz Makowski; Cezary Czaplewski; Adam Liwo; Harold A Scheraga
Journal:  J Phys Chem B       Date:  2010-01-21       Impact factor: 2.991

10.  Cooperative Binding of Cyclodextrin Dimers to Isoflavone Analogues Elucidated by Free Energy Calculations.

Authors:  Haiyang Zhang; Tianwei Tan; Csaba Hetényi; Yongqin Lv; David van der Spoel
Journal:  J Phys Chem C Nanomater Interfaces       Date:  2014-03-14       Impact factor: 4.126

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