Literature DB >> 11080173

The polymerase subunit of a dsRNA virus plays a central role in the regulation of viral RNA metabolism.

E V Makeyev1, D H Bamford.   

Abstract

Bacteriophage φ6 has a three-segmented double-stranded (ds) RNA genome, which resides inside a polymerase complex particle throughout the entire life cycle of the virus. The polymerase subunit P2, a minor constituent of the polymerase complex, has previously been reported to replicate both φ6-specific and heterologous single-stranded (ss) RNAs, giving rise to dsRNA products. In this study, we show that the enzyme is also able to use dsRNA templates to perform semi-conservative RNA transcription in vitro without the assistance of other proteins. The polymerase synthesizes predominantly plus-sense copies of φ6 dsRNA, medium and small segments being more efficient templates than the large one. This distribution of the test-tube reaction products faithfully mimics viral transcription in vivo. Experiments with chimeric ssRNAs and dsRNAs show that short terminal nucleotide sequences can account for the difference in efficiency of RNA synthesis. Taken together, these results suggest a model explaining important aspects of viral RNA metabolism regulation in terms of enzymatic properties of the polymerase subunit.

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Year:  2000        PMID: 11080173      PMCID: PMC305833          DOI: 10.1093/emboj/19.22.6275

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  35 in total

1.  Replicase activity of purified recombinant protein P2 of double-stranded RNA bacteriophage phi6.

Authors:  E V Makeyev; D H Bamford
Journal:  EMBO J       Date:  2000-01-04       Impact factor: 11.598

Review 2.  Virus structures: Those magnificent molecular machines.

Authors:  D H Bamford
Journal:  Curr Biol       Date:  2000 Jul 27-Aug 10       Impact factor: 10.834

3.  The atomic structure of the bluetongue virus core.

Authors:  J M Grimes; J N Burroughs; P Gouet; J M Diprose; R Malby; S Ziéntara; P P Mertens; D I Stuart
Journal:  Nature       Date:  1998-10-01       Impact factor: 49.962

4.  Nucleotide sequence of the large double-stranded RNA segment of bacteriophage phi 6: genes specifying the viral replicase and transcriptase.

Authors:  L Mindich; I Nemhauser; P Gottlieb; M Romantschuk; J Carton; S Frucht; J Strassman; D H Bamford; N Kalkkinen
Journal:  J Virol       Date:  1988-04       Impact factor: 5.103

5.  Tentative identification of RNA-dependent RNA polymerases of dsRNA viruses and their relationship to positive strand RNA viral polymerases.

Authors:  E V Koonin; A E Gorbalenya; K M Chumakov
Journal:  FEBS Lett       Date:  1989-07-31       Impact factor: 4.124

6.  Packaging and replication regulation revealed by chimeric genome segments of double-stranded RNA bacteriophage phi6.

Authors:  M M Poranen; D H Bamford
Journal:  RNA       Date:  1999-03       Impact factor: 4.942

7.  Transcription and replication of bacteriophage phi6 RNA.

Authors:  A Rimon; R Haselkorn
Journal:  Virology       Date:  1978-08       Impact factor: 3.616

8.  Minus-strand RNA synthesis by the segmented double-stranded RNA bacteriophage phi 6 requires continuous protein synthesis.

Authors:  N Pagratis; H R Revel
Journal:  Virology       Date:  1990-07       Impact factor: 3.616

9.  In vitro transcription of the double-stranded RNA bacteriophage phi 6 is influenced by purine NTPs and calcium.

Authors:  P M Ojala; D H Bamford
Journal:  Virology       Date:  1995-03-10       Impact factor: 3.616

10.  The large genome segment of dsRNA bacteriophage phi6 is the key regulator in the in vitro minus and plus strand synthesis.

Authors:  M Frilander; M Poranen; D H Bamford
Journal:  RNA       Date:  1995-07       Impact factor: 4.942

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  33 in total

1.  Comparison of polymerase subunits from double-stranded RNA bacteriophages.

Authors:  H Yang; E V Makeyev; D H Bamford
Journal:  J Virol       Date:  2001-11       Impact factor: 5.103

2.  Primer-independent RNA sequencing with bacteriophage phi6 RNA polymerase and chain terminators.

Authors:  E V Makeyev; D H Bamford
Journal:  RNA       Date:  2001-05       Impact factor: 4.942

3.  Those magnificent molecular machines: logistics in dsRNA virus transcription.

Authors:  Dennis H Bamford
Journal:  EMBO Rep       Date:  2002-04       Impact factor: 8.807

4.  A structural and primary sequence comparison of the viral RNA-dependent RNA polymerases.

Authors:  Jeremy A Bruenn
Journal:  Nucleic Acids Res       Date:  2003-04-01       Impact factor: 16.971

5.  Two distinct mechanisms ensure transcriptional polarity in double-stranded RNA bacteriophages.

Authors:  Hongyan Yang; Eugene V Makeyev; Sarah J Butcher; Ausra Gaidelyte; Dennis H Bamford
Journal:  J Virol       Date:  2003-01       Impact factor: 5.103

6.  Molecular basis for RNA polymerization by Qβ replicase.

Authors:  Daijiro Takeshita; Kozo Tomita
Journal:  Nat Struct Mol Biol       Date:  2012-01-15       Impact factor: 15.369

7.  Residues of the rotavirus RNA-dependent RNA polymerase template entry tunnel that mediate RNA recognition and genome replication.

Authors:  Kristen M Ogden; Harish N Ramanathan; John T Patton
Journal:  J Virol       Date:  2010-12-08       Impact factor: 5.103

8.  Novel 5'/3'RACE Method for Amplification and Determination of Single-Stranded RNAs Through Double-Stranded RNA (dsRNA) Intermediates.

Authors:  Péter Pankovics; Ákos Boros; Gábor Reuter
Journal:  Mol Biotechnol       Date:  2015-12       Impact factor: 2.695

9.  Significance in replication of the terminal nucleotides of the flavivirus genome.

Authors:  Alexander A Khromykh; Natasha Kondratieva; Jean-Yves Sgro; Ann Palmenberg; Edwin G Westaway
Journal:  J Virol       Date:  2003-10       Impact factor: 5.103

10.  Cystoviral polymerase complex protein P7 uses its acidic C-terminal tail to regulate the RNA-directed RNA polymerase P2.

Authors:  Sébastien Alphonse; Jamie J Arnold; Shibani Bhattacharya; Hsin Wang; Brian Kloss; Craig E Cameron; Ranajeet Ghose
Journal:  J Mol Biol       Date:  2014-05-09       Impact factor: 5.469

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