Literature DB >> 11058111

Human DNA polymerase kappa synthesizes DNA with extraordinarily low fidelity.

Y Zhang1, F Yuan, H Xin, X Wu, D K Rajpal, D Yang, Z Wang.   

Abstract

Escherichia coli DNA polymerase IV encoded by the dinB gene is involved in untargeted mutagenesis. Its human homologue is DNA polymerase kappa (Polkappa) encoded by the DINB1 gene. Our recent studies have indicated that human Polkappa is capable of both error-free and error-prone translesion DNA synthesis in vitro. However, it is not known whether human Polkappa also plays a role in untargeted mutagenesis. To examine this possibility, we have measured the fidelity of human Polkappa during DNA synthesis from undamaged templates. Using kinetic measurements of nucleotide incorporations and a fidelity assay with gapped M13mp2 DNA, we show that human Polkappa synthesizes DNA with extraordinarily low fidelity. At the lacZalpha target gene, human Polkappa made on average one error for every 200 nucleotides synthesized, with a predominant T-->G transversion mutation at a rate of 1/147. The overall error rate of human Polkappa is 1.7-fold lower than human Poleta, but 33-fold higher than human Polbeta, a DNA polymerase with very low fidelity. Thus, human Polkappa is one of the most inaccurate DNA polymerases known. These results support a role for human Polkappa in untargeted mutagenesis surrounding a DNA lesion and in DNA regions without damage.

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Year:  2000        PMID: 11058111      PMCID: PMC113146          DOI: 10.1093/nar/28.21.4147

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  39 in total

Review 1.  Sloppier copier DNA polymerases involved in genome repair.

Authors:  M F Goodman; B Tippin
Journal:  Curr Opin Genet Dev       Date:  2000-04       Impact factor: 5.578

2.  Mutation enhancement by DINB1, a mammalian homologue of the Escherichia coli mutagenesis protein dinB.

Authors:  T Ogi; T Kato; T Kato; H Ohmori
Journal:  Genes Cells       Date:  1999-11       Impact factor: 1.891

3.  The human REV1 gene codes for a DNA template-dependent dCMP transferase.

Authors:  W Lin; H Xin; Y Zhang; X Wu; F Yuan; Z Wang
Journal:  Nucleic Acids Res       Date:  1999-11-15       Impact factor: 16.971

4.  Analyzing fidelity of DNA polymerases.

Authors:  K Bebenek; T A Kunkel
Journal:  Methods Enzymol       Date:  1995       Impact factor: 1.600

5.  Gel fidelity assay measuring nucleotide misinsertion, exonucleolytic proofreading, and lesion bypass efficiencies.

Authors:  S Creighton; L B Bloom; M F Goodman
Journal:  Methods Enzymol       Date:  1995       Impact factor: 1.600

6.  Error-free and error-prone lesion bypass by human DNA polymerase kappa in vitro.

Authors:  Y Zhang; F Yuan; X Wu; M Wang; O Rechkoblit; J S Taylor; N E Geacintov; Z Wang
Journal:  Nucleic Acids Res       Date:  2000-11-01       Impact factor: 16.971

7.  Specificity of DNA lesion bypass by the yeast DNA polymerase eta.

Authors:  F Yuan; Y Zhang; D K Rajpal; X Wu; D Guo; M Wang; J S Taylor; Z Wang
Journal:  J Biol Chem       Date:  2000-03-17       Impact factor: 5.157

8.  A human REV7 homolog that interacts with the polymerase zeta catalytic subunit hREV3 and the spindle assembly checkpoint protein hMAD2.

Authors:  Y Murakumo; T Roth; H Ishii; D Rasio; S Numata; C M Croce; R Fishel
Journal:  J Biol Chem       Date:  2000-02-11       Impact factor: 5.157

9.  Fidelity and processivity of Saccharomyces cerevisiae DNA polymerase eta.

Authors:  M T Washington; R E Johnson; S Prakash; L Prakash
Journal:  J Biol Chem       Date:  1999-12-24       Impact factor: 5.157

10.  Role of RecA protein in untargeted UV mutagenesis of bacteriophage lambda: evidence for the requirement for the dinB gene.

Authors:  A Brotcorne-Lannoye; G Maenhaut-Michel
Journal:  Proc Natl Acad Sci U S A       Date:  1986-06       Impact factor: 11.205

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  46 in total

1.  Sulfolobus solfataricus P2 DNA polymerase IV (Dpo4): an archaeal DinB-like DNA polymerase with lesion-bypass properties akin to eukaryotic poleta.

Authors:  F Boudsocq; S Iwai; F Hanaoka; R Woodgate
Journal:  Nucleic Acids Res       Date:  2001-11-15       Impact factor: 16.971

2.  Accessibility of DNA polymerases to repair synthesis during nucleotide excision repair in yeast cell-free extracts.

Authors:  X Wu; D Guo; F Yuan; Z Wang
Journal:  Nucleic Acids Res       Date:  2001-07-15       Impact factor: 16.971

3.  UmuD(2) inhibits a non-covalent step during DinB-mediated template slippage on homopolymeric nucleotide runs.

Authors:  James J Foti; Angela M Delucia; Catherine M Joyce; Graham C Walker
Journal:  J Biol Chem       Date:  2010-05-13       Impact factor: 5.157

4.  Bypass of N²-ethylguanine by human DNA polymerase κ.

Authors:  Matthew G Pence; Patrick Blans; Charles N Zink; James C Fishbein; Fred W Perrino
Journal:  DNA Repair (Amst)       Date:  2010-10-16

5.  Mutagenesis and repair induced by the DNA advanced glycation end product N2-1-(carboxyethyl)-2'-deoxyguanosine in human cells.

Authors:  Daniel Tamae; Punnajit Lim; Gerald E Wuenschell; John Termini
Journal:  Biochemistry       Date:  2011-02-28       Impact factor: 3.162

6.  Error-prone translesion synthesis past DNA-peptide cross-links conjugated to the major groove of DNA via C5 of thymidine.

Authors:  Susith Wickramaratne; Emily J Boldry; Charles Buehler; Yen-Chih Wang; Mark D Distefano; Natalia Y Tretyakova
Journal:  J Biol Chem       Date:  2014-11-12       Impact factor: 5.157

7.  Prenatal exposure to environmental tobacco smoke alters gene expression in the developing murine hippocampus.

Authors:  Partha Mukhopadhyay; Kristin H Horn; Robert M Greene; M Michele Pisano
Journal:  Reprod Toxicol       Date:  2009-12-05       Impact factor: 3.143

8.  Two distinct translesion synthesis pathways across a lipid peroxidation-derived DNA adduct in mammalian cells.

Authors:  In-Young Yang; Keiji Hashimoto; Niels de Wind; Ian A Blair; Masaaki Moriya
Journal:  J Biol Chem       Date:  2008-11-03       Impact factor: 5.157

9.  Mouse Rev1 protein interacts with multiple DNA polymerases involved in translesion DNA synthesis.

Authors:  Caixia Guo; Paula L Fischhaber; Margaret J Luk-Paszyc; Yuji Masuda; Jing Zhou; Kenji Kamiya; Caroline Kisker; Errol C Friedberg
Journal:  EMBO J       Date:  2003-12-15       Impact factor: 11.598

10.  Pre-Steady-State Kinetic Analysis of Truncated and Full-Length Saccharomyces cerevisiae DNA Polymerase Eta.

Authors:  Jessica A Brown; Likui Zhang; Shanen M Sherrer; John-Stephen Taylor; Peter M J Burgers; Zucai Suo
Journal:  J Nucleic Acids       Date:  2010-07-25
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